BAC Information

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BAC

Clone NameMSMg01-384L21
Chromosome7 (Build37)
Map Location 8,811,028 - 8,811,412
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
Downstream geneLOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L21.T7 (MSMg01no384_l21.b1)MSMg01-384L21.TJ (MSMg01no384_l21.g1)
ACCAG488107AG488108
length759750
length of high quality
(start - end)
391 (30 - 420)445 (61 - 505)
definitionCHROMAT_FILE: MSMg01no384_l21.b1 PHD_FILE: MSMg01no384_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:06 2005CHROMAT_FILE: MSMg01no384_l21.g1 PHD_FILE: MSMg01no384_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCCGCTAAACGACTCCTATATGCAGAGGATCCGCGGAATTCCAAGAACAG
GACGCAGAGTCAAAGACAGTTTCTACTCCAGCTGGTAGGGTTCCCACATG
AAGATTCTGCTGCATATCTGAATGTTTCAGTTTAAATAATTGGTGGGTTT
TATTTGGTATTTATTATGGGTTGACAAAAAATAGCTTTGTACATAAAGCA
CCTATGAAACAGATAGATATACTTCCCAAGCGTGTAATCAAGTGGTTCTT
TAAACCTTTCTAAAATTTTAAGCTTCATATAGTGGTGATCCCAACAAAAA
TATTCAGTTTTTACTTCACAACTATGATTTTGCTGCTGTTATGAATCATT
TTGTAAATAACTGATATGCAACCCCAAAGGGGTTACAGCCCACAGATTGA
GAGGCACTTTATTCCAACACTTTGGAGGCAGCCGCAGACAGATACACTAA
GATACCAACCAGCCTGGACTACCTATTGTATTCCACGCCCCCCTGGGCTT
TAAGTACACTTTTCTCCATTAACCAAAACCCCACACTTTTTGACTCCCCC
CCCCTCGTTTCCCACACTCTCCCCTCCTTATTCTCCCCCCAGCGCATTTT
AACCCACATCCCCCCTTTATTCTCCCCCCCTTCTCTTCTTCTACTCCACT
CCCCCCCTTCTCCCCCCCCCCCTTCCTTCCTACTTCCCCCTTCTACCCCC
TCCTTCCCCTTTTTCTTTACCCCACAATTCCCTTCCCCCCCTTCCTCCCC
CTCCTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATATCAGCTGGTGTGTGCTGGCTGGTTGGTATTCCGGTGT
CAGAGAGAACTCGGAGGTTCAGGTTAATTGAGACTACTGGGCGTCCTACA
ATGTTGCTCTCCTCCTCCTCATCTTCCTGGTTTTCCATAATTGAAACTCA
GTGTTCAGCAGCTTCAGTCTACTGGTTGGGGGCAAATATCTGTATCTGAC
TCAGCTGCTTGTTGGATTTTTCAGAGGGCAGTCACGATATGCCCCGTTTT
TGTGAGTGCTCCACAGCCTCAATAATAGTGTCAGGCCTTAGGACCTCCCC
TTGAGCTGGATCCAACACTGGGCCTGTGGCTGGATCTCATTTTAGACAGG
GTCCTCTCCATTTCTATTGCTGCAGTTCTTTCAGCAGGAACAATTATGGG
TCAGTGTTTTGAATGTGGCATGGAAATCTCCTCCCTCGTTTTTTTGTTTG
TTTGTTTGTTTGGTTGTTTTTAAAGACAAAACTGAAGAAAATTCAGTTGT
GGGATTGAATGTCCTCTCAGTGGATGAAAGGTTGCTGTATAATCATAAAG
GACTTAGTTGTGGAACCTTCCCTGGGTGACATGCCCTTCTTACTTATTCC
TAAAAATGGTGGCCCTGGGACACCCATTTTTATTAGCTTGGCCTTGGTCC
CAACCTCGGTCCCTATCTATTAATCCGGGGGCCAAAGAGGTGGCCCACAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l21.b1 MSMg01no384_l21.b1 CHROMAT_FILE:
MSMg01no384_l21.b1 PHD_FILE: MSMg01no384_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:06 2005
         (391 letters)



>mm_chr7_8810822_8811612
          Length = 791

 Score =  729 bits (377), Expect = 0.0
 Identities = 383/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccaagaacaggacgcagagtcaaagacagtttctactccagctggtagggttccc 66
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 207 gaattccaagaacaggaagcagagtcaaagacagtttctactccaggtggtagggttccc 266

                                                                       
Query: 67  acatgaagattctgctgcatatctgaatgtttcagtttaaataattggtgggttttattt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acatgaagattctgctgcatatctgaatgtttcagtttaaataattggtgggttttattt 326

                                                                       
Query: 127 ggtatttattatgggttgacaaaaaatagctttgtacataaagcacctatgaaacagata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtatttattatgggttgacaaaaaatagctttgtacataaagcacctatgaaacagata 386

                                                                       
Query: 187 gatatacttcccaagcgtgtaatcaagtggttctttaaacctttctaaaattttaagctt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatatacttcccaagcgtgtaatcaagtggttctttaaacctttctaaaattttaagctt 446

                                                                       
Query: 247 catatagtggtgatcccaacaaaaatattcagtttttacttcacaactatgattttgctg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catatagtggtgatcccaacaaaaatattcagtttttacttcacaactatgattttgctg 506

                                                                       
Query: 307 ctgttatgaatcattttgtaaataactgatatgcaaccccaaaggggttacagcccacag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgttatgaatcattttgtaaataactgatatgcaaccccaaaggggttacagcccacag 566

                                    
Query: 367 attgagaggcactttattccaacac 391
           |||||||||||||||||||||||||
Sbjct: 567 attgagaggcactttattccaacac 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)