BAC Information

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BAC

Clone NameMSMg01-385H06
Chromosome7 (Build37)
Map Location 20,558,188 - 20,558,664
singlet/doubletsinglet
Overlap geneCeacam20
Upstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872
Downstream geneNlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385H06.T7 (MSMg01no385_h06.b1)MSMg01-385H06.TJ (MSMg01no385_h06.g1)
ACCAG488650AG488651
length761765
length of high quality
(start - end)		536 (26 - 561)477 (55 - 531)
definitionCHROMAT_FILE: MSMg01no385_h06.b1 PHD_FILE: MSMg01no385_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:02 2005CHROMAT_FILE: MSMg01no385_h06.g1 PHD_FILE: MSMg01no385_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATAGGTTCATCAT
TAAGAAATCATCTATTTGTCTATATAGCATCACTACTAGACAGTGCATCT
TCATGGATCTGCAGAGATCTGCTTTGAAGGGGTGTGCTATTACTTAGTGA
TTGTTATATATGTTTAATAATAATAGGAAAAGCATATTAATAGCAAGAAT
CTTTGTTAAAATGAATCCCTTACAGCCTTGCTTAATAAGGGTGAACCTGT
CACAGATTATATAATAATCTGAAGCAGGAGGCCATCTCAGGAAGATCTAG
TTATTAGCTTGCTAATAACTATATAACATGCTATTATATAATTATCTGCC
AGTTATTAGCTTGTCCCATTATGGCTCCTGACACATAAGGAAAACAGATG
TATTCTGTATCACTTTCCTCCATGTGGGGTTTTGTAATCCATTTCTGCTG
AAATATATATAGTCCACCACCAAACACCTTCCAATTCTACATTTTGGGTC
ATATGTGAACTACCAATGCCCAGCACCCTTCTCTCTCCACATCAGCAGCA
TGCTCTTCCATTTTACAGTTATTTTATGGTTTCTTAAGGTTACGTAAGTA
CCATGTGTACATATCTGTGGTTTTAACTTTCGTCCCTCGCCATAAATCCC
TGGTATCCATCCCAGTTGCATAAGGGTAAATAGGTTCTATCACTCCTCTG
ACCTGCCATTGGTATTGTATTCCCCCACAACCCCCCTCAACTTGAAAATT
TTTGTTTCTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAAGCCCTTGATCTTGGTCAAGGACGTTCTAGGACTGTTGGAACAC
TGGCGGAAGGCTTTAGCCATGTCAGAATTCAATATTAAAAAGCACTATAA
TAGGAAAATACTGAAAGAGAGCACGTGGATCCATACACTAGACTAACGCA
GTAATGGAACGCAGGAATGAAAAATTAATGTATGGGTAGAGAACACTAGA
CTCCAGGAGGAGAGCTTCCTTAAAACTCTTTTGCCTCATGAGTGACTTTT
AAGCCTTTCGGCTTGTCCAGCTGACTCGACCGGAGAGCGTAGCAATATAC
AACACATAACACATAGCAACACAACACATACACATACGTCAAGCATATGA
CAGTCATAGAAGACACAAATACATATAACACACACATACTCAATACAAAA
TACAGAGCAAGCATATCAGAGGCATATACTGAGCCATACCCACTGAGCCA
TTTCACCACCTAAATTAAAACAAATAGAACAAACAAACAAACAAACCAAC
AAACAAACCCAAATAACTTTCCAGGTTACATAGTGAGTTCAAGGCCAGTG
TGTGTAACTTAGTGAGGCCCTGTTTCAAAATACCACTGATTTCCATGCTC
CCTTGGTAAATTGTCTTGTCTACATCACCCCACGGAAGGCTTGTTGTTCT
TGGTTCATATGGTAAATACACTCGTTTTAAATTTCTTGATCTCCCATCTT
TTATTCTCGGATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_h06.g1 MSMg01no385_h06.g1 CHROMAT_FILE:
MSMg01no385_h06.g1 PHD_FILE: MSMg01no385_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:02 2005
         (477 letters)



>mm_chr7_20557988_20558864
          Length = 877

 Score =  876 bits (453), Expect = 0.0
 Identities = 471/477 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcccttgatcttggtcaaggacgttctaggactgttggaacactggcggaaggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcccttgatcttggtcaaggacgttctaggactgttggaacactggcggaaggcttt 260

                                                                       
Query: 61  agccatgtcagaattcaatattaaaaagcactataataggaaaatactgaaagagagcac 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 agccatgtcagaattcaatattaaaaagcactataataggaaaatattgaaagagagcac 320

                                                                       
Query: 121 gtggatccatacactagactaacgcagtaatggaacgcaggaatgaaaaattaatgtatg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggatccatacactagactaacgcggtaatggaacgcaggaatgaaaaattaatgtatg 380

                                                                       
Query: 181 ggtagagaacactagactccaggaggagagcttccttaaaactcttttgcctcatgagtg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagagaacgctagactccaggaggagagcttccttaaaactcttttgcctcatgagtg 440

                                                                       
Query: 241 acttttaagcctttcggcttgtccagctgactcgaccggagagcgtagcaatatacaaca 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttaagcctttcagcttgtccagctgactcgaccggagagcgtagcaatatacaaca 500

                                                                       
Query: 301 cataacacatagcaacacaacacatacacatacgtcaagcatatgacagtcatagaagac 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataacacatagcaacacaacacgtacacatacgtcaagcatatgacagtcatagaagac 560

                                                                       
Query: 361 acaaatacatataacacacacatactcaatacaaaatacagagcaagcatatcagaggca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 acaaatacatataacacacacatactcaatacaaaatacagagcaagcatatcagaggta 620

                                                                    
Query: 421 tatactgagccatacccactgagccatttcaccacctaaattaaaacaaatagaaca 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatactgagccatacccactgagccatttcaccacctaaattaaaacaaatagaaca 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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