BAC Information

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BAC

Clone NameMSMg01-385H21
Chromosome7 (Build37)
Map Location 121,676,887 - 121,814,852
singlet/doubletdoublet
Overlap genePde3b, Cyp2r1, Calca
Upstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik
Downstream geneLOC100043295, Calcb, Insc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385H21.T7 (MSMg01no385_h21.b1)MSMg01-385H21.TJ (MSMg01no385_h21.g1)
ACCAG488680AG488681
length763758
length of high quality
(start - end)		462 (35 - 496)446 (61 - 506)
definitionCHROMAT_FILE: MSMg01no385_h21.b1 PHD_FILE: MSMg01no385_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:04 2005CHROMAT_FILE: MSMg01no385_h21.g1 PHD_FILE: MSMg01no385_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,676,887 - 121,677,345)(121,814,407 - 121,814,852)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGAA
CATAATCATCAAAAGACATTTTCAAGTTTGTTAAAGAAAGACTGTCCTTG
CATTAGAAGCATCTATGGAAGTAGAAGTCCTGACAGAAAATAAAGGATAG
ACGTGAGTTCAGAAGTTCTAAGTAGTTTTCTAAGATGAATTGTAAACATG
CTATTCTTTTATATCGTTTAAACCTTGGCTTTAAAAGATTCTTACCCATT
TGCAGTCTGTACCATTTTGAGAGGGTGGTTCCCCATAATGTTAAAGAAAT
CTGACTATCCTACAAAACAACTTTCAGTATCTTTAAAATATCAAATACCA
CCCACTATACTATATTCCTTTGGAATCCTTGGCCCTAATAGCCATGCATT
ATCAAAATGTTCACAAAGTTAAAATTCCTGTCTTAGAAAATAGGAGTAAT
GAAGTGGAGCTTGTTGGATCATGCATATTTACTCCATGTTATATTGTAAA
GGTACATTTTCTTCGACACANCCTTGGAAGTTACAAATACCACACTGTGT
AACCTGTTATTCTTGAGAATTANAATANAGATATGCAAATTACCTGTTAC
CTTAAATTAAGGGCTCCTTTTATTACCCCCATCAAAAATTTTACCTTGAT
TTTTTATTATAAACCCTTACGGTGGATTTATAAAAATGGGGGATTGGGAG
GAGAATATAACAATTTCCTTAAAAAAATTTTTTTTCTGGGCGGGAAAACC
ACTTTTTTTAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGTATTGTCTCCTCCCTTCCCTTGATTTAAGTCAGGATGT
CTAGAGTTAGAAACTGAGGCAGGGGGGTTATAGGTGTGCTAGCTTTACAT
CAGCATCACAAAATACCCAAGTATTGACCAAGTTATGAAGAAAGACTTAC
CTTCAGCTCCCAGTTTCAGAACTTCAGTCTGTGGTCAGTTTGGTTGTTTT
GAAGTCTGTGGTAAGGAAGTACATCTGGGCAGGGAACAGGCAGTGACAGA
ACTATTCACCTCATGGTGGCCCAAAAGCAAAACATAGGCACGACAAGAAG
GACCACAGACCTCTCCCTTTCAAGAGGTGCTACAAGGATCCTCTAACTAG
GTTCCACTGCCCAGCAGCACACAGGCTGGAGACCAGGTTTTAACACTGAG
TAAGGCAGCAGGGGACGCACTTAAGATCTAAACTATGACATTGGGGAAGT
TACTCCCCTAAGCAAAAGGTTGTGAGGACATGTGGCAAGGCAAGAAAGCA
AAGTTAAAAGAAAAGGGTCTCTCCTCTAAAAAAAACTGCTTGAAGGGATG
GACAGGAAGGGAAAAAGGAAAGAAAATGGGCCCCTTTTTGAAAAATAAAA
AAGCCACCCGGCTTTGTGACCTAAAGGTGGACGGGTGGGGCCTTTTGTCC
CTCACCTTGCAATTGATATTAAACCCCCGACTTTTTCTATTGAACAATTA
GTTTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_h21.b1 MSMg01no385_h21.b1 CHROMAT_FILE:
MSMg01no385_h21.b1 PHD_FILE: MSMg01no385_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:04 2005
         (462 letters)



>mm_chr7_121676684_121677545
          Length = 862

 Score =  880 bits (455), Expect = 0.0
 Identities = 458/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagaacataatcatcaaaagacattttcaagtttgttaaagaaagactgtcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagaacataatcatcaaaagacattttcaagtttgttaaagaaagactgtcc 263

                                                                       
Query: 64  ttgcattagaagcatctatggaagtagaagtcctgacagaaaataaaggatagacgtgag 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgcattagaagcatctatgggagtagaagtcctgacagaaaataaaggatagacgtgag 323

                                                                       
Query: 124 ttcagaagttctaagtagttttctaagatgaattgtaaacatgctattcttttatatcgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcagaagttctaagtagttttctaagatgaattgtaaacatgctattcttttatatcgt 383

                                                                       
Query: 184 ttaaaccttggctttaaaagattcttacccatttgcagtctgtaccattttgagagggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaaaccttggctttaaaagattcttacccatttgcagtctgtaccattttgagagggtg 443

                                                                       
Query: 244 gttccccataatgttaaagaaatctgactatcctacaaaacaactttcagtatctttaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttccccataatgttaaagaaatctgactatcctacaaaacaactttcagtatctttaaa 503

                                                                       
Query: 304 atatcaaataccacccactatactatattcctttggaatccttggccctaatagccatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atatcaaataccacccactatactatattcctttggaatccttggccctaatagccatgc 563

                                                                       
Query: 364 attatcaaaatgttcacaaagttaaaattcctgtcttagaaaataggagtaatgaagtgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attatcaaaatgttcacaaagttaaaattcctgtcttagaaaataggagtaatgaagtgg 623

                                                  
Query: 424 agcttgttggatcatgcatatttactccatgttatattg 462
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcttgttggatcatgcatatttactccatgttatattg 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_h21.g1 MSMg01no385_h21.g1 CHROMAT_FILE:
MSMg01no385_h21.g1 PHD_FILE: MSMg01no385_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:04 2005
         (446 letters)



>mm_chr7_121814207_121815052
          Length = 846

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtattgtctcctcccttcccttgatttaagtcaggatgtctagagttagaaactgaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agtattgtctcctcccttcccttgatttaagtcaggatgtctagagttagaaactgaggc 587

                                                                       
Query: 61  aggggggttataggtgtgctagctttacatcagcatcacaaaatacccaagtattgacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggggggttataggtgtgctagctttacatcagcatcacaaaatacccaagtattgacca 527

                                                                       
Query: 121 agttatgaagaaagacttaccttcagctcccagtttcagaacttcagtctgtggtcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agttatgaagaaagacttaccttcagctcccagtttcagaacttcagtctgtggtcagtt 467

                                                                       
Query: 181 tggttgttttgaagtctgtggtaaggaagtacatctgggcagggaacaggcagtgacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 466 tggttgttttgaagtctgtggtaaggaagtacatctgggcagggagcaggcagtgacaga 407

                                                                       
Query: 241 actattcacctcatggtggcccaaaagcaaaacataggcacgacaagaaggaccacagac 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 406 actattcacctcatggtggcccaaaagcaaaacataggcacgacaggaaggaccacagac 347

                                                                       
Query: 301 ctctccctttcaagaggtgctacaaggatcctctaactaggttccactgcccagcagcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctctccctttcaagaggtgctacaaggatcctctaactaggttccactgcccagcagcac 287

                                                                       
Query: 361 acaggctggagaccaggttttaacactgagtaaggcagcaggggacgcacttaagatcta 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 286 acaggctggagaccaggttttaacaccgagtaaggcagcaggggacgcacttaagatcta 227

                                     
Query: 421 aactatgacattggggaagttactcc 446
           ||||||||||||||||||||||||||
Sbjct: 226 aactatgacattggggaagttactcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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