BAC Information

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BAC

Clone NameMSMg01-386P22
Chromosome7 (Build37)
Map Location 60,226,590 - 60,226,823
singlet/doubletsinglet
Overlap genenone
Upstream geneGas2, 1700015G11Rik, EG668783, EG620782, LOC100040692
Downstream geneGm1865, LOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386P22.T7 (MSMg01no386_p22.b1)MSMg01-386P22.TJ (MSMg01no386_p22.g1)
ACCAG489833AG489834
length727746
length of high quality
(start - end)
243 (72 - 314)243 (62 - 304)
definitionCHROMAT_FILE: MSMg01no386_p22.b1 PHD_FILE: MSMg01no386_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:55 2005CHROMAT_FILE: MSMg01no386_p22.g1 PHD_FILE: MSMg01no386_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGCAGTGGCTCCGNGG
AATTCTACACTTACAAAACTGGCCTTGTGCTTTTTTGGTTGGAAGGTTTT
TAATGACTACTTCTATTTCCTTAGTGGTTGTGAGACTATTTAGATGATTT
CCCTCATCTTGATTTACCTTTAATATATGGGTAGTATCTATCTAGGAAAT
CATCTATTTCATCTAGATTTTCCAGTTTTGTTGAATATAGGCTTTTGTAG
TAAGTTATGATGAGGGTTTTTTTTTAATTTCCTTAGTTTCTGCTGTTATA
GCTCTCTTTTCATTTTTGATTTTGNNAATTTGAACGCATTCTGTCTCTGT
TCCCTTTTTTTAATTTGGACAAAGGCTTATCTATCCTGATGGTTTTTTTT
TCTAAGAACCAGCACTTGTTGATCTTTAACTCTTTGAATTTTTTCCAATT
AATTCCTTTCCGCCCCGGGGGTTTGGACAATTTTCCGGGCGGGCAAACCC
CCCCTTGGGGGGGGGGAAAATTTTTTTCCGTGAACAAAAAGTTTTTCGGG
GGGGGCCGTTCTAACAACGCCTTTACATATAAAATCCTCGTTCCAATTCT
TTTTTTTTTGAGAAAATACTATCCGGGGGCGCGGCAATATTTTCTCTTCC
CTTCCATAGGAGGTATTTCTTTTTTTTTCTGTTTTTCTCCTCTCCACAAC
GTGAGTTCACTTTTTTTTTTTTTTTAT
GTGGGAGGCCTGGGGGCGCCGGTGCGCACCGGGGAGGNGAANTATAGAAT
GTCAACAGAATCCTGTTCAGCTTGAATAAAGCAGCCAAAGACAAGCTGAC
CATAGGTGACAGATGGTAAATTCAGTGACTTCACAATTTGAAGTTTAAAA
GAACTCTTCTCTTAGTAGAGACGAATGCTGAGATATAGAAGACCAAGCAA
AGAATGCAAATAGAGATTAAACAAGAGCTGGCTGATTAAACAAACTAACA
ACAACAACAACAACAGCAACAAAAAGATACTTGGAGGACTGGAGAAAATT
ATTTATTGGTATGAGAAGGAGTTAGTTTGTTTATCCACAATAGACTTTTC
TAAATGCCCTTAAAAATAAGCACAAAATTTACATGCACTGGCAACTTTGA
AAACGGGTGGTCCTTTCCCAAAATTTCTTTAAAACGGGCCCCCCGCGTTA
AATTTCCGGTTTTTCACAAGCGTCCCTTCTTTTTTTTTTGGGAAAAAAAA
CGGTTCTTGTCTGGAAAACAATTTTTTCTCTCCAAGCGTCGCTGTGGTGT
TCTATCTCCTTATCGGAGAAAAAATCTTGGGGGTGGGTGGTTTTTATTTT
ATATGCCCCCCTCTCTCCCCCTCCCTTGTGTGGGCCCCTTTTCTTTTTAC
CATCCATCTCGCCCGCTTTGCTACTCGGCTATATTACTCCTTTCCTCCGT
CTCTCCTCCTCTTAATTTATTTTTAGTCCGTTTTCTATGACCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_p22.g1 MSMg01no386_p22.g1 CHROMAT_FILE:
MSMg01no386_p22.g1 PHD_FILE: MSMg01no386_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:55 2005
         (243 letters)



>mm_chr7_60226438_60227081
          Length = 644

 Score =  327 bits (169), Expect = 4e-94
 Identities = 220/243 (90%), Gaps = 13/243 (5%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctgttcagcttgaataaagcagccaaagacaagctgaccataggtgacag-atggtaaat 60
           |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 386 ctgttcagcttgaataaagcagccaaagactagctgaccataggtgagagcatggtaaat 327

                                                                       
Query: 61  tcagtgacttcacaatttgaagtttaaaagaactcttctcttagtagagacgaatgctga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 326 tcagtgacttcaaaatttgaagtttaaaagaactcttctcttagtagagaccaatgttga 267

                                                                       
Query: 121 gatatagaagaccaagcaaagaatgcaaatagagattaaacaagagctggctgattaaac 180
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  ||||
Sbjct: 266 gatatagaagaccaagcaaagaatgtaaacagagattaaacaagagctggctgaagaaac 207

                                                                       
Query: 181 aaactaacaacaacaacaacaacagcaacaaaa---agatacttggaggactggagaaaa 237
           ||||||||||||||||||| ||        |||   |||||||||||||| |||||||||
Sbjct: 206 aaactaacaacaacaacaa-aa--------aaagttagatacttggaggaatggagaaaa 156

              
Query: 238 tta 240
           |||
Sbjct: 155 tta 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)