BAC Information

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BAC

Clone NameMSMg01-387G16
Chromosome7 (Build37)
Map Location 15,016,065 - 15,016,434
singlet/doubletsinglet
Overlap gene2810007J24Rik
Upstream geneLOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123
Downstream geneEG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387G16.T7 (MSMg01no387_g16.b1)MSMg01-387G16.TJ (MSMg01no387_g16.g1)
ACCAG490154AG490155
length734794
length of high quality
(start - end)
370 (75 - 444)450 (77 - 526)
definitionCHROMAT_FILE: MSMg01no387_g16.b1 PHD_FILE: MSMg01no387_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:28 2005CHROMAT_FILE: MSMg01no387_g16.g1 PHD_FILE: MSMg01no387_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTGTGTTCAGTCAATTGCTGCACACATCTGCAGGCAGTAA
AATCAGAAATTCAAAATTGTGCTGGGACACAGGTTATGTTGAAATAAGAC
AAGGCCATGAAATAAATAAAAAGAAATCAAGTAAAAATTTCTTTGGGCAT
TGCATATGTATATAGCCTCTTGAATTTGTAATGATTAAATCTCCATCACT
TCTTGCTACAACTTTATGCATGCTGATGGTGTGCATTATTAGAGCATGTT
AGAGACATTCACATTCAGCCACAAAAATTGAACAGGAAGCTCAGCCTTGG
GGCCTTACAATGGCCTCTGATGGAGAATGGGGTATATGGGCTCTCAGAAA
GAGGTAAATGCAAATAAACACAAAGCAGCTTTTACACTTTGACATAGGCA
GAGACAAGATGGTAAGAATACCTTGTTCTTCACACATCCCAACAACGTGT
ACCGCGGCTTTTACTTGTCCTGAAATGTTAAACATTTTACATCTACCCAG
TTACCCTTAAACCACAGAAAAATTTCTTGGAAACCCCCCCCCCCTCCCCT
TTCCAACAAAACACACAACCAACCCCGAGACCCCCCACAAATCGAATCTC
CCCCCTCCCCCGCGGACTCCCCCTCTTCACTAAACTCCCTTCTTCCCCTC
CCCCTAAAACGTCCCACTCCTCCCCCTCCCTCCC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCCAGAGCAAATAGACATCAA
AAGGAGATCAAAGAAATACAAATTAGAAAGGAAGATGTCAAAATATCACT
ATTTGCAGATGATGCGATAGTGTGTATAAGTGATCCTAAAAATTACATCA
AGGAACTTCTAAACCTGATAAACAGCTCCAGTGCAGTAACATGATAGAAA
ATTAACTCAAACAAATCAGTATCTTTTCCCTACATCAAGGATAAACAGGC
TGAGAAAGAATTTAGGGAAACAACACCCTTCAAAATAGTCACAAATAATA
TAAAATTCCTTGGTCTGACTCTAACTAAGGAAGTGAAAGATCTGTATGAT
AAGAACTTCAAGTCTCTGATGAAAGAAACTGATGAAGATCTCAGAAGATG
GAAAGATCTCTCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGG
CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAAACTCCATCAAAATT
CCCACTCAATTCTTCACAGAGTTAGAAGGAGCAATTTGCCCATTTATCTG
GAGTAACCAAAAACCTTATATAAAAAAACCTATTTTCCTCAATAAAAGAA
ACTCCTGGGGGACCTTGCCGGACTCCTAAATGGGACAAAAAAAAATTGCC
TTTACCTACCCCAACCATATCCCATCCTAACTTATCCTACTCTTACTCTC
CCCAATCCTATCTTTTTCTTTCTAACGGCGTTACCCACCAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_g16.b1 MSMg01no387_g16.b1 CHROMAT_FILE:
MSMg01no387_g16.b1 PHD_FILE: MSMg01no387_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:28 2005
         (370 letters)



>mm_chr7_15015865_15016634
          Length = 770

 Score =  638 bits (330), Expect = 0.0
 Identities = 360/370 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctgcacacatctgcaggcagtaaaatcagaaattcaaaattgtgctgggacacaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttgctgcacacatctgcaggcagtaaaatcagaaattcaaaattgtgctgggacacaggt 511

                                                                       
Query: 61  tatgttgaaataagacaaggccatgaaataaataaaaagaaatcaagtaaaaatttcttt 120
           ||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 510 tattttgaaataagacaaggccatgaaataaatcaaatgaaatcaaataaaaatttcttt 451

                                                                       
Query: 121 gggcattgcatatgtatatagcctcttgaatttgtaatgattaaatctccatcacttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gggcattgcatatgtatatagcctcttgaatttgtaatgattaaatctccatcacttctt 391

                                                                       
Query: 181 gctacaactttatgcatgctgatggtgtgcattattagagcatgttagagacattcacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gctacaactttatgcatgctgatggtgtgcattattagagcatgttagagacattcacat 331

                                                                       
Query: 241 tcagccacaaaaattgaacaggaagctcagccttggggccttacaatggcctctgatgga 300
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 330 tcagacacaaaaattgaacaggaacctcagccttggggccttacaatggcctctgatgga 271

                                                                       
Query: 301 gaatggggtatatgggctctcagaaagaggtaaatgcaaataaacacaaagcagctttta 360
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 270 gaatggggtatatgggctctcagaaagagttaaatgcaaataaagacaaagcagctttta 211

                     
Query: 361 cactttgaca 370
            ||| |||||
Sbjct: 210 gactctgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)