Query= MSMg01no387_j18.b1 MSMg01no387_j18.b1 CHROMAT_FILE:
MSMg01no387_j18.b1 PHD_FILE: MSMg01no387_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:42 2005
(232 letters)
>mm_chr7_143363904_143364534
Length = 631
Score = 296 bits (153), Expect = 8e-85
Identities = 174/181 (96%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaccaatgtttctttttttccatttgtctgtgtcttcaatgtcttctatctaca 64
|||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccaatggatatttttt-ccatttgtctgtgtcttcaatgtcttctatctaca 263
Query: 65 tttgacagtttcaatgttctgaatgattcttggtttggttttctagtaggtattgcatct 124
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tttgacagtttcagtgttctgaatgattcttggtttggttttccagtaggtattgcatct 323
Query: 125 tttcctgatgaatctattataaaagtgttgctttcctttcttgttctctctctctctctc 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccctgatgaatctattataaaagtgttgctttcctttcttgttctctctctctctctc 383
Query: 185 t 185
|
Sbjct: 384 t 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 631
Length adjustment: 9
Effective length of query: 223
Effective length of database: 622
Effective search space: 138706
Effective search space used: 138706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no387_j18.g1 MSMg01no387_j18.g1 CHROMAT_FILE:
MSMg01no387_j18.g1 PHD_FILE: MSMg01no387_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:43 2005
(404 letters)
>mm_chr7_143567169_143567972
Length = 804
Score = 721 bits (373), Expect = 0.0
Identities = 399/413 (96%), Gaps = 9/413 (2%)
Strand = Plus / Minus
Query: 1 ctaatgtgggttttaatatttaaagttgtcagtgccattattgagaatattaggatgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctaatgtgggttttaatatttaaagttgtcagtgccattattgagaatattaggatgctt 365
Query: 61 tcgtgcctaactgattaaaattacatttggaataataaatgacacgtaatgtacaaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcgtgcctaactgattaaaattacatttggaataataaatgacacgtaatgtacaaatag 305
Query: 121 ctgtctactcccacattatttttttaaagtctgaaaattcttaacaactgtgatagaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctgtctactcccacattatttttttaaagtctgaaaattcttaacaactgtgatagaaag 245
Query: 181 tagcctgaggtacttcagggacactttggttgtgtgtgaggggg---------acaaact 231
||||||| |||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 244 tagcctggggtactacagggacactttggttgtgtgtgtgggggggggaggggacaaact 185
Query: 232 cgagccagctgttatgttttataagagtttgacacaagtctgaaaagagcctctgccctc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cgagccagctgttatgttttataagagtttgacacaagtctgaaaagagcctctgccctc 125
Query: 292 agcaagttgaagggaagtctcctctgcaaacataggtacacttccttcccgagccctgga 351
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 124 agcaagttgaagggaagtctcctctgcaaacataggtagacttccttcccgagccctgga 65
Query: 352 tgactgaagatttttgttaaagcgagtcttagctctgcttagtcaagccagcc 404
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 64 tgactgaagatttttgttaaagtgagtcttagctctgcttagtcaagccagcc 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
