BAC Information

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BAC

Clone NameMSMg01-387L08
Chromosome7 (Build37)
Map Location 151,477,232 - 151,477,432
singlet/doubletsinglet
Overlap geneShank2
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneCttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387L08.T7 (MSMg01no387_l08.b1)MSMg01-387L08.TJ (MSMg01no387_l08.g1)
ACCAG490378AG490379
length814802
length of high quality
(start - end)
201 (193 - 393)377 (81 - 457)
definitionCHROMAT_FILE: MSMg01no387_l08.b1 PHD_FILE: MSMg01no387_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:50 2005CHROMAT_FILE: MSMg01no387_l08.g1 PHD_FILE: MSMg01no387_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATTTCCCGTTGTTATACCACTCACCATTTTCAGAGGATTCGCGGAATT
CTGGGGAGGTCCCCAAGACAGCATGTTACGGGAAGCAGAGAGTGGGCAAT
TTCGCATCTAAGATTCCATCCTCAGGGAACTGCATTGAAAGTAAGCAGTA
TTCCCGGCACACAAATACCATAATAACAGAATGGGAAGGAGAGACAGCCA
ATATCTGCTCTGGCTCCACACAGAAGCCTTTCACAAAGCCCTACAAGGAG
TCCTCCATGCCCATGGGGCATAATGCACTTCTATTTAGTGAGCAAGGCAG
AATCAAAATTATCTGCATAAGCCCATCTACAGGTAGGGAGGAAATCCCTG
CCCTACCCCCACCCTGGGGGATGAAAGAGCACCTTCCACTTGCTCCAGAC
TTTTCTGTTTCTCATCTTTTCTGCAGTGGTGTGCGCGTGTCCACCAATCT
CCCAATATAACTCCCCCCCCAATGTCCCGGATCACCGACACTGCCATTGT
TCCCCCTGTCCTCCCCCTCTACCAGTCGCTCTGTCTTCCCCCATCTACCT
CCCCACATGCCCTATTCCTATCCGTTTTTTTTACACCCCCTTTCCCTCTC
CCTTCCCTCCATTTTTCCCCCATCTTCCTCCCATTTCCTATCTCTCTCTT
TCCCCGTTCTTTTTTCCCTTATTTATTTCCCCTTCCCCTTCCGTTCCTTT
TCCCTTTCTTTCCATCCCTCCCCCACGTCCCTACCCTTTTCCCCGCTCCC
TTTATTATAATTCTCTTTGTTTCCCCCTCTTCCTGCTTTCCTTATCCCTC
CCTCCCCCTCCTTN
CCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAATGTATGGTATCCC
CCGGAGCTGGAGTTACATACAGGTGGTTGTAAACCAGTGAATGTGGATGC
TTGAAATCAAATTTGAGTCCTCTGGAAGAGCAGCAAATGCTCTTAGCCAC
AGAACTCTTTTTCTAGCCTCTCCACTGTAATGTTTAAAGACAGGGTCTCT
TACTGAATGTTGAGCTCACACGTTGTCTACACTGGCAGGGCAGTGAGTGC
CAAGGTTCCTGCTGGGTCTGCCTCCACAGTGCTCGGGCTAAAAGCATGTG
CTGCTGCACCAAGCCCTGTTAAAAAAATGTCAGTACTAGGGACTGAACAC
GGGTTCTCATGCTTGCACAACAGGCACTCTGCTCGCAGAACTGTCTCCCC
TTTGCTCTGTTTCATTGTAAGCCAGTTTGCTTCTTTCACTCTTCTCACTA
ACATGCTTTAATAACCTGCTGGCACCTGCCTTAACTGTGCCCCCCACATC
ACTACTTCTTCTCAGGTTGATATTATCCCCTTTTCACTCCCCCTCCTTTA
TGCCTTCCCTTTGTTTTTCTTACCCTTTCTTCTTCACCCCACACCTAGCT
TTCCTTGATATTATTTTTTTTTCTTTTCTTACCGTCTTCCTTCTACTCCC
TCTCTCCTATATACTTATTTGTTTTACCATCCCCACCCTCTCTCGCACTT
TTATCCTACATCCTGCTTTCTCTATTCCCATTATCTCTTACTTCTCTTCC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_l08.b1 MSMg01no387_l08.b1 CHROMAT_FILE:
MSMg01no387_l08.b1 PHD_FILE: MSMg01no387_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:50 2005
         (201 letters)



>mm_chr7_151477032_151477632
          Length = 601

 Score =  366 bits (189), Expect = e-106
 Identities = 198/201 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagccaatatctgctctggctccacacagaagcctttcacaaagccctacaaggagtc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagccaacatctgctctggctccacacagaagcctttcacaaagccctacaaggagtc 260

                                                                       
Query: 61  ctccatgcccatggggcataatgcacttctatttagtgagcaaggcagaatcaaaattat 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccatgcccatggggtataatgcacttctatttagtgagcaaggcagaatcaaaattat 320

                                                                       
Query: 121 ctgcataagcccatctacaggtagggaggaaatccctgccctacccccaccctgggggat 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcataagcccatctacaggcagggaggaaatccctgccctacccccaccctgggggat 380

                                
Query: 181 gaaagagcaccttccacttgc 201
           |||||||||||||||||||||
Sbjct: 381 gaaagagcaccttccacttgc 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)