BAC Information

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BAC

Clone NameMSMg01-388N12
Chromosome7 (Build37)
Map Location 24,428,253 - 24,428,617
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7
Downstream geneV1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388N12.T7 (MSMg01no388_n12.b1)MSMg01-388N12.TJ (MSMg01no388_n12.g1)
ACCAG491241AG491242
length771735
length of high quality
(start - end)
369 (34 - 402)520 (71 - 590)
definitionCHROMAT_FILE: MSMg01no388_n12.b1 PHD_FILE: MSMg01no388_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:15 2005CHROMAT_FILE: MSMg01no388_n12.g1 PHD_FILE: MSMg01no388_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAAGGG
TGCCGGACTCTTCTATATGTTGAGCCTTTAGCTACTCTTAAACTAGTTGT
TCTAGACCCTGCAACTTTCCTTTGTCATAGGCTATTTTTCATTCCAAATA
GGTTTCTCAGTTTGCCATTCAGTGATAGGGGAGCTGGTGCTCTATCAGCA
GCGGCTTCCCCATTATAAGTTGAAAACGCAGCCTATGCTGTATCCAGATT
ATGGGCAACCTGAACAGTCTGTAACTGTCTTTGATCACATTTTAAAATTG
TTTAATTATGAGATTCTTTTTTATAGACTGTCTCTAAGGTTGGAAGATTG
TTAACCTGGGCTTCCCATTGTCGCAGTAGATTTATGACTATTTAACCTAC
ATACGGCTTCAATTTTACTATTTGACCTTCTGGACATGTGCATTTAATCG
GTGGTAGACTTTCTTTTAGATGAGACAATGTCCTACTTCCTAGGAGTTGT
GTAGATAACTTTTGAAGTGGCCAAAGTTAATTTCCAAAATCTTGTGAATT
TATTGTTATATCTCCGCCTCTATCCACTAATTCTTCAATCTCACGTCCAT
CTAAGTGTAATTTTTTTATAGACCTGACCCTTTTTCTTTTTTTTTCCCCT
TGGNTATTTTATTTATTTACCTTTTTAGCGGTTGCCTCCCCTCTATGAAC
CCCCCTACCATCCCTCCCTCCCCTTTTGGCCTCAAAGAAGTTTCTTTCCC
CAACCTTGGCCCCATTTCCTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTTTTATGTCTCATACCAAATTCCTTAC
AAAATGAAATAAAATTGTTGCCAGTATAGGATGGCACACTATCTGTCTTA
ATGACGTTAGGCAATCCCATAGCATTAAAGGCTTGTAAACAATGATCAAT
TACATTTCTAGAGGCCTCTCCCATATATGAAGAAGCAAAAAGAAATCCTG
AACAGTGTCAATACAAATATGTATATATTTTAATTTTCCAAATTTTGCAT
AATGAATTACATCTATTTGCCAAATATGATTGGACATAAGACCTCGTGGA
TTAACTCCTAAATGTGGAACTGGAGATAATGTAATACATTTAGAGCATTG
TTTTACAATCATTCTTGCCTGCTCTTTAGTGATCTTGTGTCAGAGCCTTA
AGGTATGGCTAGAGAGATGAAATTTATCATGATCACGTCTAGCCAATGCA
ACAGGATCTGAAATTAAGGCCTCTCCTATTAATGCAATCATTGCCTGCAG
CTAAAGGTCCAGGAAGACCCGAATGAGCTTGTATATGACCAATATAAAAT
GGATGTTTTCGGGCAAGAATGATGTTGTGCAATTGTGAAAACAGAGATCC
TGCTGGTGTATTAAAGTTAAACATACCACAGGCCTCCAATAAGGGGATTG
ATTGTGCAACATATAAACTATCAGTAAATATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_n12.b1 MSMg01no388_n12.b1 CHROMAT_FILE:
MSMg01no388_n12.b1 PHD_FILE: MSMg01no388_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:15 2005
         (369 letters)



>mm_chr7_24428049_24428817
          Length = 769

 Score =  636 bits (329), Expect = 0.0
 Identities = 356/365 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaagggtgccggactcttctatatgttgagcctttagctactcttaaactagt 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaaggctggtggactcttctatatgttgagcctttagctactcttaaactagt 264

                                                                       
Query: 65  tgttctagaccctgcaactttcctttgtcataggctatttttcattccaaataggtttct 124
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttctaaaccctgtaactttcctttgtcataggctatttttcattccaaataggtttct 324

                                                                       
Query: 125 cagtttgccattcagtgataggggagctggtgctctatcagcagcggcttccccattata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtttgccattcagtgataggggagctggtgctctatcagcagcggcttccccattata 384

                                                                       
Query: 185 agttgaaaacgcagcctatgctgtatccagattatgggcaacctgaacagtctgtaactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttgaaaacgcagcctatgctgtatccagattatgggcaacctgaacagtctgtaactg 444

                                                                       
Query: 245 tctttgatcacattttaaaattgtttaattatgagattcttttttatagactgtctctaa 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 445 tctttgatcacattttaaaattgcttaattatgagattcttttttatagcctgtctctaa 504

                                                                       
Query: 305 ggttggaagattgttaacctgggcttcccattgtcgcagtagatttatgactatttaacc 364
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 505 ggttggaagattgttaacctgggcttcccattgtcacagtagatttatgactatttaagc 564

                
Query: 365 tacat 369
           |||||
Sbjct: 565 tacat 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)