BAC Information

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BAC

Clone NameMSMg01-389I17
Chromosome7 (Build37)
Map Location 77,027,736 - 77,198,970
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389I17.T7 (MSMg01no389_i17.b1)MSMg01-389I17.TJ (MSMg01no389_i17.g1)
ACCAG491774AG491775
length750726
length of high quality
(start - end)
413 (84 - 496)244 (87 - 330)
definitionCHROMAT_FILE: MSMg01no389_i17.b1 PHD_FILE: MSMg01no389_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:11 2005CHROMAT_FILE: MSMg01no389_i17.g1 PHD_FILE: MSMg01no389_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,027,736 - 77,028,148)(77,198,727 - 77,198,970)
sequence
CCCCACCTTATAATTTGGGGCGCTAAANGACTCACTATTTCCAGAGGATC
CGCGGAATTCAGTGGATTACGCTCAGCACCTAGCAGTGTTTTTCTGCTGA
CGTACTCAGTAGTGATATCTATTTGCCATGGAAAAAAGACCTCCTTCCCT
CAAGTTACCTAACCCATCCCTAGTCAGGGCCTTTGGAACTCCTTGTGGAA
CAATCTGGGCAGGACAGTTAACAGAAAACTCTTTACAAGGACAAGGACAA
AACAGACTATCAGATAATTAGAGACAATAAAAGTGGTTGAGAAATATAGG
ATAGCTTTAGTCAGCACACTGTGACCTTTTGGCAAATGCCAAGAAAGGAG
AAAAACTATAGCAGTCTGAAAAGGTGGCTCACTGGTAAAATCTCTCCTAC
ATTTTTTTTAAAATTGGAATTTTATTTGTTTACATTTCAAATGTTATCCC
TTTTCCCGGTTTCCCCTCTGCAAATCCCCTATCCCATCTCCCCACTTACC
CTGCTTCTATGAGGATGTTCCCCCACCCACCCACTCCTGTCTCACCGNCC
TAGCATTCCTTCTAACTGTGGCACGGAGCTTTAATAGGACCAAGGGCCCC
CTCCTCCCACTGATGCCAGATACCGCCCCCCTCCGCCCCTTTGAGTCCAA
TCTCCCCCCCCCCCTGTGAAAATGCCCTACCCTCCGGAAAACCCCCGCAT
CCCAAAACCCTTGTCGGTCCGGCCCAGCCCAAACAAAAAACTCCCGGGGG

TCTCCNNNCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATCAATTTTTATGGCAT
CTCAACACTTGTCTTTCTGTAAAGAGAACACAGCTAGCCATTGGGTTTCA
CGCACATGGGTTTTGTACCTGATACACTATCAAGCACTTGCTATTGCCAT
TGAAAGAGTATCTCCAGCTGAGAAGAGACCAACTGAATGCTCTCTCAAAT
ACACCATTTTTCCACCACTCAGGACAGTGTCTTTTACAGCTGGGCCTCCG
TTCACTTTGTCTGGGAAGCTTTTCAAATACTTTTTTTCTTAAACATACTG
GGTCTTGTTCTCTAGCATGAAACCTGGAGGTTTGCCTTGTTAACAGGCAA
ACCTTATGTGAATCTTCCACAGGCTGAAAGGAAGGAAGCATCTCAGATAT
GGTTCAGAGGTCACCAATTGGATGGGGGTGACCCTGGGGCCTGTGGCTAC
AAGCCCCACATGACTGAGAAAAGTTTCGAGAGTCGTTCAAATATGCACCA
GTTGTCCCCTTATGGTTTACTAGAGTTTGGCTGTAGAATGTCTTCTATAG
GCTCAGGTGCTTCAGCATTAGGTTCACAGCTGTGGGTGCTTCCAGGGGAC
CTGGTGGGGCTGTTTTTATTTTTTTCTTCCCCACAAGAAGCTTGCTGGAA
AGGTACCCTTAAGCGTTTACCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_i17.b1 MSMg01no389_i17.b1 CHROMAT_FILE:
MSMg01no389_i17.b1 PHD_FILE: MSMg01no389_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:11 2005
         (413 letters)



>mm_chr7_77027536_77028348
          Length = 813

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/413 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtttttctgctgacgtactcagtagtgatatctatttgccatggaaaaaagacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtttttctgctgacgtactcagtagtgatatctatttgccatggaaaaaagacctc 260

                                                                       
Query: 61  cttccctcaagttacctaacccatccctagtcagggcctttggaactccttgtggaacaa 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcccccaagttacctaacccatccctagtcagggcctttggaactccttgtggaacaa 320

                                                                       
Query: 121 tctgggcaggacagttaacagaaaactctttacaaggacaaggacaaaacagactatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgggcaggacagttaacagaaaactctttacaaggacaaggacaaaacagactatcag 380

                                                                       
Query: 181 ataattagagacaataaaagtggttgagaaatataggatagctttagtcagcacactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattagagacaataaaagtggttgagaaatataggatagctttagtcagcacactgtg 440

                                                                       
Query: 241 accttttggcaaatgccaagaaaggagaaaaactatagcagtctgaaaaggtggctcact 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 accttttggcaaatgccaagaaaggagaaaaactatagcagcctgaaaaggtggctcact 500

                                                                       
Query: 301 ggtaaaatctctcctacattttttttaaaattggaattttatttgtttacatttcaaatg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtaaaatctctcctagattttttttaaaattggaattttatttgtttacatttcaaatg 560

                                                                
Query: 361 ttatcccttttcccggtttcccctctgcaaatcccctatcccatctccccact 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatcccttttcccggtttcccctctgcaaatcccctatcccatctccccact 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no389_i17.g1 MSMg01no389_i17.g1 CHROMAT_FILE:
MSMg01no389_i17.g1 PHD_FILE: MSMg01no389_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:11 2005
         (244 letters)



>mm_chr7_77198527_77199170
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttttatggcatctcaacacttgtctttctgtaaagagaacacagctagccattgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 aatttttatggcatctcaacacttgtctttctgtaaagagaacacagctagccgttgggt 385

                                                                       
Query: 61  ttcacgcacatgggttttgtacctgatacactatcaagcacttgctattgccattgaaag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 ttcacgcacatgggttttgtacctgatacactatcaagcactcgctattgccattgaaag 325

                                                                       
Query: 121 agtatctccagctgagaagagaccaactgaatgctctctcaaatacaccatttttccacc 180
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 324 agtatctccagctgagaagagatcaactgaatgctctctcaaatacaccattttcccacc 265

                                                                       
Query: 181 actcaggacagtgtcttttacagctgggcctccgttcactttgtctgggaagcttttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcaggacagtgtcttttacagctgggcctccgttcactttgtctgggaagcttttcaa 205

               
Query: 241 atac 244
           ||||
Sbjct: 204 atac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)