Query= MSMg01no389_p18.b1 MSMg01no389_p18.b1 CHROMAT_FILE:
MSMg01no389_p18.b1 PHD_FILE: MSMg01no389_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:45 2005
(273 letters)
>mm_chr7_97401470_97402144
Length = 675
Score = 516 bits (267), Expect = e-151
Identities = 273/275 (99%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 1 gccacataaagaaaccctttcttg-aaaaaaac-caaaatcactgtaatatatctgggtt 58
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 475 gccacataaagaaaccctttcttgaaaaaaaacacaaaatcactgtaatatatctgggtt 416
Query: 59 tatcatcccacctccttcagccctcagcatgacatagaggatactaaggcattgatgggg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tatcatcccacctccttcagccctcagcatgacatagaggatactaaggcattgatgggg 356
Query: 119 cacatataaaagggcacaatgaagacaattccatgtaacaggcaagagtgtggagttctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cacatataaaagggcacaatgaagacaattccatgtaacaggcaagagtgtggagttctg 296
Query: 179 aagttcagctccagtgctcctaggcaagtccacctcttcaggaagccacggaaagtcaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagttcagctccagtgctcctaggcaagtccacctcttcaggaagccacggaaagtcaaa 236
Query: 239 aattaaaccttcaattgccatgatttccacaaggg 273
|||||||||||||||||||||||||||||||||||
Sbjct: 235 aattaaaccttcaattgccatgatttccacaaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 675
Length adjustment: 9
Effective length of query: 264
Effective length of database: 666
Effective search space: 175824
Effective search space used: 175824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no389_p18.g1 MSMg01no389_p18.g1 CHROMAT_FILE:
MSMg01no389_p18.g1 PHD_FILE: MSMg01no389_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:45 2005
(561 letters)
>mm_chr7_97251320_97252280
Length = 961
Score = 917 bits (474), Expect = 0.0
Identities = 540/562 (96%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 1 taagagtagaggcaggagacctgagagtttgagtttaccttgaaccaagttataccaagc 60
||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 taagagtagaggcaggagaacggagagtttgagtttaccttgaaccaagctataccaagc 260
Query: 61 caatatcagatacatagtgagaacttgcctgagtaaataaatgaattaaagtctaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatatcagatacatagtgagaacttgcctgagtaaataaatgaattaaagtctaaaatt 320
Query: 121 catagaggattatgttaaatatgaggcttgaagctgggcatggtggttcatgcctgtaat 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 321 catagaggattatgttaaatatgaagcttgaagctgggcatggtggttcatgcctggaat 380
Query: 181 ctcaacattcaaggaagc-gagacaggaaaatcatgagttccaggctagcctgggctaca 239
|||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 381 ctcaacattcaagg-agctgagacagcaaaatcatgagttccaagctagcctgggctaca 439
Query: 240 attcaaggtctgtctgaattaactagtaagaccaatctttaaaggtggggtatgatagta 299
|||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 440 attcaaggtcagtctaaattaactagtaaaaccaatccttaaaggtggggtatgatagta 499
Query: 300 catgccctcaatcccagaactcgagaggaagaggtaggtgaatctctgtgagttctaggc 359
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 catgcccttaatcccagaactcgagaggcagaggtaggtgaatctctgtgagttctaggc 559
Query: 360 cagccttattgacaaaataggttccaggtcagccaaggctacatagtgagactgtctcaa 419
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 cagccttactgacaaaataggttccaggtcagccagggctacatagtgagactgtctcaa 619
Query: 420 aagaaacaaaagggcaaaagagaaaaagccagttgtgtctgtaagaaaaataattttctt 479
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 620 aagaaacaaaaaggcaaaagagaaaaagctagttgtgtctgtaagaaaaataatattctt 679
Query: 480 ctgagttcaaattgctagctttgaagaagtaatttcctttttttgaaaacaagtttaatg 539
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 ctgagttcaaattgctatctttgaagaagtaatttcatttttttgaaaacaagtttaatg 739
Query: 540 agatttattttcttttttgagg 561
||||||||||||||||||||||
Sbjct: 740 agatttattttcttttttgagg 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
