Query= MSMg01no390_a21.b1 MSMg01no390_a21.b1 CHROMAT_FILE:
MSMg01no390_a21.b1 PHD_FILE: MSMg01no390_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:50 2005
(558 letters)
>mm_chr7_62003225_62004181
Length = 957
Score = 924 bits (478), Expect = 0.0
Identities = 538/562 (95%), Gaps = 10/562 (1%)
Strand = Plus / Minus
Query: 1 aaaaaaagaaaaaaaaagttgtgatttactcctgatctcaaagtctaccgtctgcagtac 60
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 756 aaaaaaa-aaaaaaaaagttgtgatttact-ctgatctcaaagtctactgtctgcagtac 699
Query: 61 tagaacaggatggtagtgtcttttgactgcttcttctaaaatctgcagatattctatata 120
||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 698 tagaaca----ggtagtgtcttctgactgcttcttctaaaatctgcagatattctatgta 643
Query: 121 gttatattctctaatgtaatctctaccagggttagcatcattcacatgcaatatttacct 180
| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 642 gctatattctctaatgtggtctctaccagggttagcatcattcacgtgcaatatttacct 583
Query: 181 cacactca----ttttttttcacgtattttgaatctgagtatattttcatgaaaaacatg 236
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 582 cacactcattttttttttttcacgtattttgaatctgagtatatttttatgaaaaacatg 523
Query: 237 ttagattaagaaagggtaaactcctaaataagaactaaagttcaaaaagactcaaggatg 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttagattaagaaagggtaaactcgtaaataagaactaaagttcaaaaagactcaaggatg 463
Query: 297 caattcaaatggattcaagtgagaactaatattccatggaaaataaaaatatctacaatt 356
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 462 caattcaaatggattcaagtgagaactaatgttccatggaaaataaaagtatctacaatt 403
Query: 357 gttgtactgtttatccttgtgattgataatctctggtatacacagtatagactgtatctt 416
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 402 gttgtactgtttatccttgagattgataatctctggtatacacagtagagactgtatctt 343
Query: 417 cctttgagttgaccacaacaagtagaatagctctacccctttacaaagaacatacccatt 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 342 cctttgagttgaccacaacaagtagaatagctctacccctttacaaagaacagacccatt 283
Query: 477 ggctgtaagtgcattctttatcctttgaattagattattatcaaggctggtggacaggca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggctgtaagtgcattctttatcctttgaattagattattatcaaggctggtggacaggca 223
Query: 537 tggggacagcaaacagataaaa 558
||||||||||||||||||||||
Sbjct: 222 tggggacagcaaacagataaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_a21.g1 MSMg01no390_a21.g1 CHROMAT_FILE:
MSMg01no390_a21.g1 PHD_FILE: MSMg01no390_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:51 2005
(568 letters)
>mm_chr7_61843663_61844632
Length = 970
Score = 949 bits (491), Expect = 0.0
Identities = 549/571 (96%), Gaps = 7/571 (1%)
Strand = Plus / Plus
Query: 1 cagcaaatgcccacagatttaaaactatttttaataatcctgtgaaaatctaagcctatc 60
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcaaatacccacagatttaaaacaatttttaataatcctgtgaaaatctaagcctatc 260
Query: 61 tatgcacattcctgtgtcctctcccatccattttaggggtcagtcatctcataaaattta 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tatgcacattcctgtgtcctctcccatccattttagggctcagtcatctcataaaattta 320
Query: 121 ggcattagtaggaagcagtaggcaaggattctttctccaggtactaatagttgtgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcattagtaggaagcagtaggcaaggattctttctccaggtactaatagttgtgtgtgt 380
Query: 181 --ccttctcttctgcttttcttctctgtagccattcagtctttaactttaaagaaggaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccttctcttctgcttttcttctctgtagccattcagtctttaactttaaagaaggaag 440
Query: 239 ggattagatgaataataaaagctgaaactcacttcttacattcttacatttctccctctt 298
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 441 ggattagatgaataagaaaagctgaaactcacctcttacattcttacatttgtccctctt 500
Query: 299 ctttatcttatggatgattttaagattttaaagggatactcaggaaggtacttacattgt 358
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ctttatcttatgtaagattttaagattttaaagggatacccaggaaggtacttacattgt 560
Query: 359 gtgtttatgaggttggttgttttgttttgttttgttttgttttgttttgcttgttttgct 418
|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gtgtatctgaggttggttgttttgttttgttttgttttgttttgttttg----ttttgct 616
Query: 419 tgttttaccaaatctcatttgatgatcaataatgatggagtagacaagagcttgagtaac 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 tgttttaccaaatctcatttgatgatcaataatgatggagtagataagagcttgagtaac 676
Query: 479 aaaacaaatgatggaataaatatcagga-aaaaagtattattttaaatatattatgttta 537
||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||
Sbjct: 677 aaaacaaatgatggaataaatctcaggataaaaagcattatttcaaatatattatgttta 736
Query: 538 tgaatcagtacagcattgtaggggaattttt 568
|||||||||||||||||||||||||||||||
Sbjct: 737 tgaatcagtacagcattgtaggggaattttt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 970
Length adjustment: 10
Effective length of query: 558
Effective length of database: 960
Effective search space: 535680
Effective search space used: 535680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
