BAC Information

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BAC

Clone NameMSMg01-391B16
Chromosome7 (Build37)
Map Location 82,120,063 - 82,120,522
singlet/doubletsinglet
Overlap genenone
Upstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik
Downstream geneSv2b, 1500012K07Rik, LOC100042171, Akap13, Klhl25, LOC100042210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B16.T7 (MSMg01no391_b16.b1)MSMg01-391B16.TJ (MSMg01no391_b16.g1)
ACCAG492958AG492959
length760743
length of high quality
(start - end)
460 (59 - 518)489 (81 - 569)
definitionCHROMAT_FILE: MSMg01no391_b16.b1 PHD_FILE: MSMg01no391_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:13 2005CHROMAT_FILE: MSMg01no391_b16.g1 PHD_FILE: MSMg01no391_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
CCTTTACACACATACACACACACACACACACACACACACACATCCCTCAG
CTTAACAACTATCTATTTCTTCATAAAGAATAGTCTAGCCTCATAGTCTA
GCATGACTGATCTGAATATTTTAGTGTTTTCCCTATGTCTGTTTATAATA
CAAAAGCCACAACTCAGGCTAAGCTCAGAGCAGGGTATCATGGAGAAGTG
GCAATATTGTTAGCCATAATTTTTCTTTCCTGATGTACAAATTGTTTTCC
AGGCAGAAAGTTGTGGCTTTATCAGTTCATTCATGCCAGTGTTAACTTAC
AATCTCTCTCCCAGTGTTGTCTGTAATTTGTTTACCTAGGACTTCAACTT
TGCCCCATCTAATAAAGAGATACAAATAATCAATCAAAAACATATTCATT
TCAGGAAATTATGTAACAAAAGGCAGCTTCCATACCTTCCTTTGGCAGAA
TCGCCATTATCAGAGACAGAATACAGAACTGTATGAACAATTATTTCAAC
GCAGCAAGTTTTAAGACTCTAAAAAAAATCAGTCTTTATTTTTGAAATTC
CAATGTTCTAGCAATGTTTCCATTCTACTAATATCACCCCGAGCTGGAGC
AATCCCCTTTTCTTGATATCATAAGCTGAGTCCCAGGGGAGCCCACTGAA
TATGACAACCCCCGGAATTTGTTTGCTAGCACCCCCGCATGGTGGGAAAA
ACGGTTGCCC
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATTTTCCTGCTTGTACC
TCCAAATTGGATGCTGGGATGCTGGGATGCTGGGATGCTGGGATGCTGGG
ATGCTGGGATGCTGGGATGCTGGGATGCTGGGATTACAGGCAAATTCCAC
CTAGCTCTCCCCCACTCTGATAGAGTTTCACTCTGTAGCTAAGACTGGCC
TGTAACTCATAGCTATTCTCCTACCCCAGCCTCCTTCATGCTGGATGGAC
AGGTATTAGCTTCCATGTCCTTTTTAGTTTTTTTTTTCAGAACTAGAAAG
TTAATGACAGATTCTGTAAGCTTGAGTTTAAATGTCCATCCAAATGGGTA
CCTAAGGAAAATGATTCAAAGTTGTTGGGAGCATAGCACGAAAGCCTTTG
TGTCTACAGATCTCCAGAGAAACTAGGAATTGTAAGCATGCAGGATTCAA
AACCTGTTCTTTCCCCCAGAAAACTGGGAATTAGAAGTGATTAATAGCCT
GGTGATCTGTTTTATCTGTTGGTCCAGCGCTGCGGCCGGCCTGCGGCTCT
CATGTTCGGCCTCGAGTCCGTAATGCATCTTGTAACTGCCACATATATGT
TTCCTTTGCTCTACTCCTAACACATGGCATCCAGCACTTTTCCCCCGCCC
AAGGTCCTAATATCCCTTGCCTGAGGGATCCCCTTTTATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b16.b1 MSMg01no391_b16.b1 CHROMAT_FILE:
MSMg01no391_b16.b1 PHD_FILE: MSMg01no391_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:13 2005
         (460 letters)



>mm_chr7_82119863_82120722
          Length = 860

 Score =  851 bits (440), Expect = 0.0
 Identities = 455/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatacacacacacacacacacacacacacacatccctcagcttaacaactatctattt 60
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 201 cacacacacacacacacacacacacacacacacatccctcagcttagcaactatccattt 260

                                                                       
Query: 61  cttcataaagaatagtctagcctcatagtctagcatgactgatctgaatattttagtgtt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cttcataaagaatagtctagcctcatagtctagcatgactgagctgaatattttagtgtt 320

                                                                       
Query: 121 ttccctatgtctgtttataatacaaaagccacaactcaggctaagctcagagcagggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctatgtctgtttataatacaaaagccacaactcaggctaagctcagagcagggtat 380

                                                                       
Query: 181 catggagaagtggcaatattgttagccataatttttctttcctgatgtacaaattgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggagaagtggcaatattgttagccataatttttctttcctgatgtacaaattgtttt 440

                                                                       
Query: 241 ccaggcagaaagttgtggctttatcagttcattcatgccagtgttaacttacaatctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaggcagaaagttgtggctttatcagttcattcatgccagtgttaacttacaatctctc 500

                                                                       
Query: 301 tcccagtgttgtctgtaatttgtttacctaggacttcaactttgccccatctaataaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccagtgttgtctgtaatttgtttacctaggacttcaactttgccccatctaataaaga 560

                                                                       
Query: 361 gatacaaataatcaatcaaaaacatattcatttcaggaaattatgtaacaaaaggcagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacaaataatcaatcaaaaacatattcatttcaggaaattatgtaacaaaaggcagct 620

                                                   
Query: 421 tccataccttcctttggcagaatcgccattatcagagaca 460
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 tccataccttcctttggcagaatcaccattatcagagaca 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)