BAC Information

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BAC

Clone NameMSMg01-392A02
Chromosome7 (Build37)
Map Location 71,235,275 - 71,235,479
singlet/doubletsinglet
Overlap genenone
Upstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A02.T7 (MSMg01no392_a02.b1)MSMg01-392A02.TJ (MSMg01no392_a02.g1)
ACCAG493643AG493644
length752762
length of high quality
(start - end)
496 (55 - 550)394 (74 - 467)
definitionCHROMAT_FILE: MSMg01no392_a02.b1 PHD_FILE: MSMg01no392_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:24 2005CHROMAT_FILE: MSMg01no392_a02.g1 PHD_FILE: MSMg01no392_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAATTGTTCCTTTGTGAATTCACAGTGCTCCACTGTGTGTCA
CAGTGTTCCACTGTGGTGTCATAGTGCTCCCCTGTGGTGTCACTGTGTTC
CACTGTGTTGTCACAGTGCTCCAATGTGCTGTCACAGTTCTCCGCTGTGG
TGTCACAGTGCCCCACTCTTGTGTCACTGTGCTTCACTGTGGTATCATGG
TACTCCACTGTGGTGTTACATTGCTCAACTGTGCATTCACAATGCACCAC
TGTGATGTCCCAGTGCTCCAATGTGATATCCCATTGTATCCACTGTGGTG
ACACTGTGCTCCACTATAGTGTCACTATGCTACACTGTGGTTTCACAGTG
TTCTTCTGTAGTTTCACAGTACTCCACTGTGTTTTTCACAGTCCTCCACT
GTGTTGAGAGTACAACATTGTGCTGTCACAGTGCTCCACTATAGTATAAC
AGTGCTCACTATGGTGTCAAAATTCTCCACTTTGCTGTCACAGACTCCAC
TGTGGAGACATCATGTTGCACTGTGCTGTGACAGTGCAAAACGGTGATGT
CACAATGCTCCACTGTGATGTCACAGTGCATTACTGTGGCGTCACACAAA
TCTACTGTGCCGCCATACTGCTCAAATGTGGCGTCACCGCGCCTCTACCG
TGCTGTCCCTGCTCTCCACTGCAAAATCACATTGCTCCCCTGCCGCGCCC
CC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCAATATTATTGTGTGAGGTGCAAT
ATGTGCTTTGAGCTCTACTATAGTTTTTTTAATGAATGTGGATGCCCTTG
AATTTGGAGCATGGATATTCAGAATTGAGAGTTCATCTTGGTAGATTTTA
TCTTTGGTGAATATGAAGTGCCTCTCCTTGTCTTTTTTTTTAACTTTGGG
CTGAAAGTAAATTTGATTTGATATTAGAATGGCTACTCCAGCTTCTTTCT
TCAGACCATTTGCTTGGAAAATTGTTTTCCAGTCTTTTACTGTGACTTAG
TGTTTGACTTTTTCCCTGAGATGGGTTTCCTGTAAGCAGCCAAATGTTGG
GTCCTGTTTATGTAGCCAGTCTGTTAGTCTATGTCTTTTTATTTGGGAAT
TGACTCCATTGATATTAACAGATATTAAGGACAAGTAATCGTTGCTTCCT
GCTCTTTTGCCTGCTTGTTTGTTTGTCCCGTTTGTTCGCACCCCTCCACC
CTTTCTCTTTTTTCTTTTCCCTCCTCTTTTTTTCCCCCTCTTCTTTTTTT
TTCCCCCTTTCTCCCTTTTCTCTCCCTTTTTTTTTTCTTTACTCCCGCCT
CTTTTCCTCGTTCTTCTCCCCTTTTTCTTTCCTCCCCCCCCCTTTTCTCG
TCTCTCTCCCTTTTTCCTTTTCCCCCCCCCCCCCCCTCTTTCTCTTCGTT
TTTTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a02.b1 MSMg01no392_a02.b1 CHROMAT_FILE:
MSMg01no392_a02.b1 PHD_FILE: MSMg01no392_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:24 2005
         (496 letters)



>mm_chr7_71235052_71235946
          Length = 895

 Score =  128 bits (66), Expect = 1e-33
 Identities = 174/214 (81%), Gaps = 17/214 (7%)
 Strand = Plus / Plus

                                                                       
Query: 24  tcacagtgctccactg-tgtgtcacagtgttccactgtggtgtcatagtgctcccctgtg 82
           |||||| ||||||||| ||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 224 tcacag-gctccactgttgtgtcacagtgttccactgtggtgtcatagtgcttcactctg 282

                                                                       
Query: 83  gtgt--cactgtgttccactgtgttgtcacagtgctccaatgtgctgtcacagtt-ctcc 139
           ||||  ||  ||||||| || || ||||| ||| ||||| |||| ||||||| || ||||
Sbjct: 283 gtgtttca--gtgttcccctttgctgtcaaagttctccattgtggtgtcaca-ttgctcc 339

                                                                       
Query: 140 gctgtggtgtcacagtgccccactcttgtgtcactgtgcttc-actgtggtatca---tg 195
             |||| | ||| ||||| | ||||||||||||  ||||| | ||| || |||||   ||
Sbjct: 340 a-tgtgctatcatagtgctctactcttgtgtcaaagtgct-ctactttgctatcacattg 397

                                             
Query: 196 gtactccactgtggtgttacattgctcaactgtg 229
              |||||||||||||| ||| ||||| ||||||
Sbjct: 398 ---ctccactgtggtgtcacagtgctccactgtg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space:   430110
Effective search space used:   430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)