BAC Information

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BAC

Clone NameMSMg01-392E05
Chromosome7 (Build37)
Map Location 15,673,786 - 15,674,070
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381
Downstream geneLOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E05.T7 (MSMg01no392_e05.b1)MSMg01-392E05.TJ (MSMg01no392_e05.g1)
ACCAG493838AG493839
length772787
length of high quality
(start - end)
406 (74 - 479)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no392_e05.b1 PHD_FILE: MSMg01no392_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:44 2005CHROMAT_FILE: MSMg01no392_e05.g1 PHD_FILE: MSMg01no392_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATATATTTTGGATATTGGCCCTCTAACAGATGTAGGG
TTAGTGAAGATGTCCTATTGGCAGTGTCCTTTACCTTACAGAAGCTTTTA
AATTTCATGAGATTCCACATGTCATTTTTGATATTAGAGTCTGAGCCATT
GGTGTTCTTTTCAGGAAATTTTCCCCTGTGCCACTGAGTTCAAGGCTATT
TTCCATTTTCTATTCTATTGGATTCAGTGTATCTGGTTTTATGTTGAAGT
CCCTGATCCATTTGGACTTGTGTTTTGTATAAGATGATAAATAAGGTAAG
ATGTACAAATATGGATCAGTTTGTATTCAGGTACAGGCAGAACTCCAATT
AGGCAAGCACCACTTGTTGAACATGCTTCCTATTTTCCCACTGTATGTCT
TCGAGTTCTTTGTCAAAGATCAAGTATGCACAGCAGTGTAAGTATATTTC
AAGACCTTCACTATGTGATTTATCAACCGGTCTGTGACTATGCCCATACC
CTGAAGCTTTATCACCTACTGATCTGCTTTACCGTGAGGTTGCCCACGAA
GACTTCTCCACAAACTTCTTTAAACCTTCCACCAACTTTTTTCCCTTCCT
GACGCTCTTTGTATTTCTCCTTTTACCTCTCCCATACTTTCCCTTCTATT
TCCCCCCCACAATTTTGGCTCGTATTCTTCCACTCGCACCCCCTTCTCAC
CCTCGTCCCCCTCCTCTCTCTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGATAGGTTCGTCAGAATATGGGG
TTGGATCTTTCTGTTGTTTTAGCTGTTCCACTGCTGGACATATATCAAAG
GGTGCTTATCCCTACTACAAGGTCACTTGATCAACAGTGTACATTGCTTC
TCTATTGGTAATAGCCGGTAATTAGAAATAGCCTAGGTGTCTGCTGGGGA
CAGCATACAAGGACATGGACTGCCTGTGGTAGGCCAAGATGCAGATATTT
CAGTAGATGTAAAAAATATTTTTTGTTCCCATTTCTCCTAAACTCAGGAC
CTGACAAGGCACACATACATTTCATTTGTGCATGACTGCTTTTCAGCTGG
CCTTGGAGTCCACTACCCATTCTATTATATCTGAATTTCTTATTTTCTAA
TTACTCATTTTCTTATATCCCCTTTTCCACTTTCCCATTCCTCCCCTTTT
ACCTTTTCCCATGCTCCCTCCTACATGTTTTCTACCATTTCCTTCCTCAC
CCTTCCACTCATCTCACTTTTTTCCTTTTCCCCCCTCGTCTTTCCTCCCC
TTATTCTTTCTTTAACCCCCTTTCCTCCCTCCCCCCCCCCTTTTTTCTCT
CCCCACATCCCCACCACTATTTCCTCTTTCTTCATCCCCTTTTTTCATAC
CTCCACCCCCCTCTTCCTTCTCCCATCCTCCTCCTTCCCATTTCCCCCCC
CTCCTCCCCGCCCTCTTACACCTTCTGTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e05.g1 MSMg01no392_e05.g1 CHROMAT_FILE:
MSMg01no392_e05.g1 PHD_FILE: MSMg01no392_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:44 2005
         (284 letters)



>mm_chr7_15673587_15674270
          Length = 684

 Score =  437 bits (226), Expect = e-127
 Identities = 270/290 (93%), Gaps = 11/290 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggataggttcgtcagaatatggggttggatctttctgttgttttagctgttccactg 60
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 200 agtggagaggttcgtcagaatatggggttggatttttctgttgttttagctgtaccactg 259

                                                                       
Query: 61  ctggacatatatcaaaggg-tgcttatccctactacaaggtcacttgatcaacagtgtac 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctggacatatatcaaaggggtgcttatccctactacaaggtcacttgatcaacagtgtac 319

                                                                       
Query: 120 attgcttctctattggtaatagccggtaattagaaatagcctaggtgtctgctggggaca 179
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 attgcttctctattagtaatagccagtaattagaaatagcctaggtgtctgctggggaca 379

                                                                       
Query: 180 gcatacaaggacatggactgcctgtggtaggccaagatgcagatatttcagtagatgtaa 239
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 380 gcatacaaggacatggactgcctgtgttaggccaagatggagatatttcagtagatgtaa 439

                                                             
Query: 240 aaaata-----ttttttgttcccatttctcctaaactcaggacctgacaa 284
           ||||||     |     ||||||||||||||||| || ||||||||||||
Sbjct: 440 aaaataaaaagt-----gttcccatttctcctaaccttaggacctgacaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)