BAC Information

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BAC

Clone NameMSMg01-392F07
Chromosome7 (Build37)
Map Location 127,734,168 - 127,734,660
singlet/doubletsinglet
Overlap genenone
Upstream geneAcsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914
Downstream geneE130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F07.T7 (MSMg01no392_f07.b1)MSMg01-392F07.TJ (MSMg01no392_f07.g1)
ACCAG493890AG493891
length771730
length of high quality
(start - end)
490 (50 - 539)398 (75 - 472)
definitionCHROMAT_FILE: MSMg01no392_f07.b1 PHD_FILE: MSMg01no392_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005CHROMAT_FILE: MSMg01no392_f07.g1 PHD_FILE: MSMg01no392_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCATATTCCTAAAATGTTACAGATGAAGGCACTTTTTAAAA
TGAGATTATCTGGATGTAACAGTTTATACCTATTACCATAACATTCAACT
GAACCCAGAGGCCATGGGTTTGAGGTCAGCTTATGCTACAGTGACAACAC
ACATACACACACACACACATACACACATACACACGCATAATGTGTATGGG
TATGCATGCAAAATTAGTTTAGATCTGTAGTATATGGGCTACTTCACAAT
TAAAGTGTGTCTAGAGCATTTATTTAATGGTCTATCTTAAGATAATTTTG
TTCAGATACTTAGAACACCTGAACTATGAAAGAAAGCTACTTGATTTGCT
AGCACATTAATGCAGACAAAATATTCACATACATAAGATAAATAAAATAA
AGGAATGCAATGGGATGGTGATAAATCCAGTACTTTATAATAGGTTCAAA
TACTAAGCTAAAAATACATGAAATTGGTCAAATTGTTTCAGTTTCAGAAA
ATCATCATATTCTTATTTTGAGTTGTATATGTTTTAAAGTGTTTGACGCC
CCCATAACATGTGGGCCACTATTGTACCCACGGGTATATCTTGCAGGCAG
GTTGCTATTGTAACTTGCCCAGTTTGTAGCTGAGTAAAGTCAATGACTAC
TCTTGCTCCTGGGAACCTTACAAAACCCTCCGCCACCATGAATACTTGGC
CGGTAGGGAGGAAAAAGTACN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAA
CTCAGAAATCTGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTG
CGCCACCACTGCCCAGCTCAATTATCTAAATTTTTAACTAAAAACTTTCT
CTTTTATCTTTCTTTTCTTTTCTTTTCTTTCTTCACTCTCTCCTTTCTTT
CTTCACTCTCTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCTTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTT
CTTTCTTTCTTTGAGACAGAGTTTCACTGGATAGCCCTAACTGGCCTATA
ATTTGCTGTGTAGATCAGGCTAGCCTCAGTTTCACAGGGTTCTCCCTTCC
TCTACCTCCCTATTGCTGGATTTTAAAGGTGCGGCTTTTTCTACATGTTT
TGAGAGAAAATCTCACTCTATAACTGAAGCCGGCCTCAAATTCTCTCTTA
TTGTTTTTTAACCTACAACAAATTATTTCGCGTGGTCACCCGCTGTTACG
CGGATCCCGTCTTCTTGCCCCTCGCTCTCTCTTGCCTTTTTGTCCCGTAT
ACCCTGTTCTCCCGTATCCTTCTTCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f07.b1 MSMg01no392_f07.b1 CHROMAT_FILE:
MSMg01no392_f07.b1 PHD_FILE: MSMg01no392_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:49 2005
         (490 letters)



>mm_chr7_127733977_127734866
          Length = 890

 Score =  795 bits (411), Expect = 0.0
 Identities = 467/493 (94%), Gaps = 12/493 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcatattcctaaaatgttacagatgaaggcactttttaaaatgagattatctg 63
           |||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 192 ggaattctcatagtcataaaatgttacaaatgaaggcactttttaaagtgagattatctg 251

                                                                       
Query: 64  gatgtaacagtttatacctattaccataacattcaactgaacccagaggccatgggtttg 123
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 252 gatgtaacagtttatacctatcaccttaacattcaactgaacccagaggccatgggtttg 311

                                                                       
Query: 124 aggtcagcttatgctacagtgacaacacacatacacacacacacacatacacacatacac 183
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aggtcagcctgtgctacagtgacaacacacatacacacacacacacatacacacatacac 371

                                                                       
Query: 184 acgcataatgtgt------------atgggtatgcatgcaaaattagtttagatctgtag 231
           || ||||||||||            |||||||||||||||||||||||||||||||||||
Sbjct: 372 acacataatgtgtgtgttcatgtgaatgggtatgcatgcaaaattagtttagatctgtag 431

                                                                       
Query: 232 tatatgggctacttcacaattaaagtgtgtctagagcatttatttaatggtctatcttaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 432 tatatgggctacttcacaattaaagtgtgtctagagcatttatttaatgatctatcttaa 491

                                                                       
Query: 292 gataattttgttcagatacttagaacacctgaactatgaaagaaagctacttgatttgct 351
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gataattttgttcagaaacttagaacacctgaactatgaaagaaagctacttgatttgct 551

                                                                       
Query: 352 agcacattaatgcagacaaaatattcacatacataagataaataaaataaaggaatgcaa 411
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 552 agcacattaatgcagacaaaatattcacacacataagataaataaaataaaggaatgcaa 611

                                                                       
Query: 412 tgggatggtgataaatccagtactttataataggttcaaatactaagctaaaaatacatg 471
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgggatggtgataaatctagtactttataataggttcaaatactaagctaaaaatacatg 671

                        
Query: 472 aaattggtcaaat 484
           ||||| |||||||
Sbjct: 672 aaattcgtcaaat 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)