BAC Information

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BAC

Clone NameMSMg01-392O05
Chromosome7 (Build37)
Map Location 79,993,041 - 79,993,279
singlet/doubletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
Downstream geneLOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392O05.T7 (MSMg01no392_o05.b1)MSMg01-392O05.TJ (MSMg01no392_o05.g1)
ACCAG494317AG494318
length753765
length of high quality
(start - end)
187 (128 - 314)242 (71 - 312)
definitionCHROMAT_FILE: MSMg01no392_o05.b1 PHD_FILE: MSMg01no392_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:34 2005CHROMAT_FILE: MSMg01no392_o05.g1 PHD_FILE: MSMg01no392_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCATTATAATTTGCGGCCGCTAAAAAANCCANATTCGNTACCGATTN
GNGGAANCCAGTTTTCGTCCACCCGCTTCATNNGGNGAANTTCCCAGGAA
ATTTTCCACAGCACTGATCCCCCCTCCCAAGCCTGTCTTGGAAGCTGTTT
GTTTGGTTGGTGTTTTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTACCTATCTATCTATCTATTCACTTTATT
TTTTCATCTCAGCTCTCCCTCCCTTCTCTTCTCCCCACCCTTTCCTCACA
AATCACTCCCTCCATTTTGTGCTTTCATTCNCCNCAGAGAAGAAGAAGCC
GCGNNAGTTTTTCCCACCATGGGCCATCAAGTCACAGCAGGACTAAGCAC
ATCCTTTTCCACCCCCCCCTTACAAGGCAGCCCTGCTTCAAGAAGTGGAC
CCAATAGCAGGCAACAGAGTCAGAGATAGCCCCACTCCAGCTGTTAGAGG
ATCCACATAAAGACCAAGCTACCCATCTGCTACAAATTTCTAGGGGGTCT
AGGCACAGCCCTTGCATGCTCTTTGATTGGAGGTTTAGCCCCTGTGAGCC
TCCATGGCACCAGGCTACTTGACTCTGGACGCCCTTCTCGCGCGGTTTTT
TTTTTTTTTTGGACTTCCCCACCCCTATCCCCCCTAACCCCCACCCGATT
CCCTGAGCTCCCCACAGCTGCCCCACCTGGTGCCCTTTTCGCTTCTGCCT
CCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCGAAACTCCAAACCCTTGTATGTACAGTCATTTGATGAT
CACATATTGTTATGTGGCAACAACAGTTGTGACTTGTGATTTCAGTGCCT
TAGTTAAGAACACATTGACTGGGGCCAAGTCATGAGATTTTTCTTTTATT
TTTCTAAGTTTTCATACTTTCTGGTATGATCTAAGATCTATTCTGAGGTT
TTTTTTTTTTTAAATGGTATGAGCAGAGGTTCCAAGTCATTCTAGTTTAA
ATTTTAGCTAGCTATTCCTCACTATATTAAAATAAAATTGCACATAGNTG
TACAGTTTGTTATCAAATATGTATACATTGGAGAATGGGTGATATGAGCG
AATATATGCCCCCCCCCCTATATCTATTCTTTTTGTGGTGATAATACTTA
CCTATGCTCTTTGACCATTTTCAACGTTCTCTTACTCCCTTATCACTTAC
ACCCCCTACGCTCCCACTTCATTTTTCCTCTGAATTCCGGCCACCCCCCC
CCTCTTCTTTTTCCACCTCCCCCTCCTCTTTCACCCCTCTACTCTTATTT
CCCCCCTGCTACCTTTTTTGCCCCTTTTTTCTTCCAAACCCGCCCGCCAA
TACCTTTTTTTTCTCCCCTTCCTTCCTCCCTCGCCCCCCCCCCTTCACTA
TGATTCCCCCCCTTTCCATTGCCCCCCCCCCCCCCACTCGTTCGCCCACC
TTGTTTTTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_o05.g1 MSMg01no392_o05.g1 CHROMAT_FILE:
MSMg01no392_o05.g1 PHD_FILE: MSMg01no392_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:35 2005
         (242 letters)



>mm_chr7_79992841_79993480
          Length = 640

 Score =  439 bits (227), Expect = e-128
 Identities = 237/243 (97%), Gaps = 6/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacccttgtatgtacagtcatttgatgatcacatattgttatgtggcaacaacagttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaacccttgtatgtacagtcatttgatgatcacatattgttatgtggcaacaacagttgt 380

                                                                       
Query: 61  gacttgtgatttcagtgccttagttaagaacacattgactggggccaagtcatgagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gacttgtgatttcagtgccttagttaagaacacattgactggggccaagtcatgagattt 320

                                                                       
Query: 121 ttcttttatttttctaagttttcatactttctggtatgatctaagatctattctgaggt- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 319 ttcttttatttttctaagttttcatactttctggtatgatctaagatctattctgaggta 260

                                                                       
Query: 180 -ttttttttttttaaatggtatgagcagaggttccaagtcattctagtttaaattttagc 238
            ||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtttttttt----aaatggtatgagcagaggttccaagtcattctagtttaaattttagc 204

              
Query: 239 tag 241
           |||
Sbjct: 203 tag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 640
Length adjustment: 9
Effective length of query: 233
Effective length of database: 631
Effective search space:   147023
Effective search space used:   147023
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)