BAC Information

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BAC

Clone NameMSMg01-393A08
Chromosome7 (Build37)
Map Location 38,382,539 - 38,569,102
singlet/doubletdoublet
Overlap geneZfp536, LOC100043453
Upstream geneTshz3, LOC100043874
Downstream geneEG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393A08.T7 (MSMg01no393_a08.b1)MSMg01-393A08.TJ (MSMg01no393_a08.g1)
ACCAG494418AG494419
length765794
length of high quality
(start - end)		576 (33 - 608)420 (64 - 483)
definitionCHROMAT_FILE: MSMg01no393_a08.b1 PHD_FILE: MSMg01no393_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:46 2005CHROMAT_FILE: MSMg01no393_a08.g1 PHD_FILE: MSMg01no393_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,382,539 - 38,383,111)(38,568,683 - 38,569,102)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAGCAGA
TACCAAAGTAAAACCCAAAACTGTAGTTCGTATCTCAAACCCGAGGCCAC
CTTCATGTCCTTCCTCTGTTCTTAGTAACTGCTGGACAGAAATCCCGGCA
GACTCCTCATAGGAAAGAGCTCAAGGAATAAGGGTGGGTGAGGGAGTGAA
TAGGTGGAGAGCAAGGGGACCAAGGGGCCGATTCGGGTATATCACCCACC
CATCAAAAATGAGGCCTGAGAGCAACACTCATGTGAGTCATGACAAAGTC
TAGGTAGTAACTGTTGGTTCTACTAGGAACAACTAGTGCCTGTCCTCTCT
GCACACTCCATGTGATAGTCCTGTGTGAATCAAATGACCACAAGCCCAAA
GTGAAGGGCAGCTGAACTTCCTCTGTCTGTGCATGTGTGTGGTACAGACC
TCACAGGTGAGGTTCATGGCCATCTCTCACATCCTGACTCCAAGCTGAAG
ACAGTTGCACCTTGAGTGGCACCCAACATTGTGCCAAAGGGAAACAACTG
ATCCCACTGTTAGGTTCCTTCCCAATCACAAATCCCAGCTGCCCTTTATA
AGCTCCGTACAGAGTCCAGTCCATGGAGGTTGGGGGACACAGAGACAGAC
CACTCCGACGGACTGACATCCGAGACTTGGAGAGTTATAGCAGATTGACC
AAAACCCGAAAACAGACCTGCAAATCTTAGAGAGAGAGAGAGGTGTTTCT
CCCTCCTTTTTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTAGCCAACAAGGAAATGAAAACTAAAACTGATTTGA
TATTTAATGAAGATGTTTAAGAAGGGCAAAGACAAAGTTAGTTTAGTGAT
AAATCCTAGTCTTATTTTCACCACCAATGGAAAAATGAGCTCTGTATATA
CCAGTGTCTGTGTTTTAGAAAGAAAATGTAAGAGTATGGTGTCTTCAAAA
CTGCACTCAGAGATCATGAAGGAGTCACCATGAACCTCAGAGTGATGGCA
AAGATTGGAGGAGGGCAGACAAAGGTGTGACCCTTCCTATTGCATGATGA
GGCCCCGAGGTTCACTGCCCAAACAATTAAATATGCCTGCTCTGAGAGTT
CATCTCACTTGAATCAGAAGGAAGTCTTTTATCAAGAAAGCAACTACTGG
GGAAGGGGTGTGGAGGAGGAACCCTTATTCATGCTGGTGCGGTGTAAATT
GGTTCACCCACCATGGATATCAGTACAGAAATTCCTCCATAAACTAACTG
TATAAATCGAGTATGGACCTCTTTATACCACTCCTTGTACACTCCTGGAA
GGATCCTTATTTCTACTTCCCTTCTATACCCTTTCCCCATTCCTATTTTT
ATAGTTTGCATTGTTTCTAACTTATCCTTGAATTATAATACCCGTTTATA
TGTTTTATCTTTCTAAGGTTTATACAAAATAATATTTTGTTCTACCCTAA
ACACATGTAATTTTCTCATTATCTCTCATTAAATATATTTGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_a08.b1 MSMg01no393_a08.b1 CHROMAT_FILE:
MSMg01no393_a08.b1 PHD_FILE: MSMg01no393_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:46 2005
         (576 letters)



>mm_chr7_38382336_38383311
          Length = 976

 Score = 1100 bits (569), Expect = 0.0
 Identities = 572/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatagcagataccaaagtaaaacccaaaactgtagttcgtatctcaaacccgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagcagataccaaagtaaaacccaaaactgtagttcgtatctcaaacccgag 263

                                                                       
Query: 64  gccaccttcatgtccttcctctgttcttagtaactgctggacagaaatcccggcagactc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccaccttcatgtccttcctctgttcttagtaactgctggacagaaatcccggcagactc 323

                                                                       
Query: 124 ctcataggaaagagctcaaggaataagggtgggtgagggagtgaataggtggagagcaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcataggaaagagctcaaggaataagggtgggtgagggagtgaataggtggagagcaag 383

                                                                       
Query: 184 gggaccaaggggccgattcgggtatatcacccacccatcaaaaatgaggcctgagagcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggaccaaggggccgattcgggtatatcacccacccatcaaaaatgaggcctgagagcaa 443

                                                                       
Query: 244 cactcatgtgagtcatgacaaagtctaggtagtaactgttggttctactaggaacaacta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactcatgtgagtcatgacaaagtctaggtagtaactgttggttctactaggaacaacta 503

                                                                       
Query: 304 gtgcctgtcctctctgcacactccatgtgatagtcctgtgtgaatcaaatgaccacaagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgcctgtcctctctgcacactccatgtgatagtcctgtgtgaatcaaatgaccacaagc 563

                                                                       
Query: 364 ccaaagtgaagggcagctgaacttcctctgtctgtgcatgtgtgtggtacagacctcaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccaaagtgaagggcagctgaacttcctctgtctgtgcatgtgtgtggtacagacctcaca 623

                                                                       
Query: 424 ggtgaggttcatggccatctctcacatcctgactccaagctgaagacagttgcaccttga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtgaggttcatggccatctctcacatcctgactccaagctgaagacagttgcaccttga 683

                                                                       
Query: 484 gtggcacccaacattgtgccaaagggaaacaactgatcccactgttaggttccttcccaa 543
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 684 gtggcacccaacattgtgccaaagggaaacaactgatcccactgttagcttccttcccaa 743

                                            
Query: 544 tcacaaatcccagctgccctttataagctccgt 576
           |||||||||||||||||||||||||||||||||
Sbjct: 744 tcacaaatcccagctgccctttataagctccgt 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_a08.g1 MSMg01no393_a08.g1 CHROMAT_FILE:
MSMg01no393_a08.g1 PHD_FILE: MSMg01no393_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:46 2005
         (420 letters)



>mm_chr7_38568577_38569396
          Length = 820

 Score =  812 bits (420), Expect = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagccaacaaggaaatgaaaactaaaactgatttgatatttaatgaagatgtttaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttagccaacaaggaaatgaaaactaaaactgatttgatatttaatgaagatgtttaagaa 467

                                                                       
Query: 61  gggcaaagacaaagttagtttagtgataaatcctagtcttattttcaccaccaatggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gggcaaagacaaagttagtttagtgataaatcctagtcttattttcaccaccaatggaaa 407

                                                                       
Query: 121 aatgagctctgtatataccagtgtctgtgttttagaaagaaaatgtaagagtatggtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatgagctctgtatataccagtgtctgtgttttagaaagaaaatgtaagagtatggtgtc 347

                                                                       
Query: 181 ttcaaaactgcactcagagatcatgaaggagtcaccatgaacctcagagtgatggcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttcaaaactgcactcagagatcatgaaggagtcaccatgaacctcagagtgatggcaaag 287

                                                                       
Query: 241 attggaggagggcagacaaaggtgtgacccttcctattgcatgatgaggccccgaggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 attggaggagggcagacaaaggtgtgacccttcctattgcatgatgaggccccgaggttc 227

                                                                       
Query: 301 actgcccaaacaattaaatatgcctgctctgagagttcatctcacttgaatcagaaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 actgcccaaacaattaaatatgcctgctctgagagttcatctcacttgaatcagaaggaa 167

                                                                       
Query: 361 gtcttttatcaagaaagcaactactggggaaggggtgtggaggaggaacccttattcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gtcttttatcaagaaagcaactactggggaaggggtgtggaggaggaacccttattcatg 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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