BAC Information

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BAC

Clone NameMSMg01-397F03
Chromosome7 (Build37)
Map Location 111,551,349 - 111,551,621
singlet/doubletsinglet
Overlap geneLOC100041595
Upstream geneDub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219
Downstream geneTrim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397F03.T7 (MSMg01no397_f03.b1)MSMg01-397F03.TJ (MSMg01no397_f03.g1)
ACCAG497688AG497689
length748772
length of high quality
(start - end)		362 (51 - 412)273 (77 - 349)
definitionCHROMAT_FILE: MSMg01no397_f03.b1 PHD_FILE: MSMg01no397_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:43 2005CHROMAT_FILE: MSMg01no397_f03.g1 PHD_FILE: MSMg01no397_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCGCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATG
TACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTT
CCAGCTTCTGACTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATG
TGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGT
ATTGCAGAATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCA
GACTGATTGCCAGACTGGTTGTACAAGCTTGCAATCCCACCAACAATGGA
GGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAA
TTTTTGATCTTAGCCATTCCGACTGGTGTGAGATGGAATCTCAGGCTTGT
CTTGGCTTGCCTTCCTTTGATGCTTACCCATGGTGTTCCCTATTTCACGG
CGGTTCCAACTTTTCCGCTTACCTCTATTGATTACCTCTCCGTTCTCCCT
CTTATCCCTCTTCTTACTTCCTACTTTCCACTCTTCTTTCTCTTTTCCTT
TATTTTTTTTCCCTCCTCTTTTTTCTCCTTTTCTTTTCCCATCTCTTTCC
TTTTTTTTTCCCCCTCCCTTTTGCGTTTCTCTCCTCCCCCTTTCTCTTTT
TTCTTCCTACTCACTCTCCATCCTTCTCCTCATACCTCTCTCATTTTG

CCGATGATATTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTGCAGAGAATGTTCATGCAG
AGCTAGATAATAGTCTGGGAATTTTATAGTTTTAATTCCCGAACAAGCCT
TAAGAACAAACAGAGAAGACGGTGGGTGAGTAAAATGTGGAAAATACAGA
GACATGGTAGCCCTTGCTTCTCATCCATGTACTTGAGAGTTGGAGAAAGT
AGTATTCCCTGGAATTAGAGACTGTCCTAAAAACTTAGAAAGCTCTAGCC
CAGGATTGAGTATAGAGTAAATCCCTGCCTCAAAAACAAATTGTTAGTGT
TTGGCCTAAATAGTTACACATCATATGGATGGGAACACCATAATATTTCT
TGCCAGCAATTGTGTCCCAGCCTGATCATCTTCACAGTCTCATGTGTTCT
TTGCCATGTGTATTTTACACCACGCTTTTTTCTTGTTCTGCACCTCCATC
CCAGTTTACCTTCCTTGCCACCATTCCCCCCTCCTTTTCCCACTTTTCCC
TCTTCTTTCCTCCCTTCCCGCTCTCTTTCATTCTCTACTTTCTTTTACTT
GGATTCTCTCCAACACTTCTTTTCCTTCTTCCCGCCTTCTGCTCTCTCTC
TTGTCCTTCCCCCCCTTTTCCATCATTTTCCCTCTTCTTTTCTCTTTTTT
TTCTTTTTTCGATCTCGTCTTTGCTTTTCATGTTCCCTTTTTTATCTCTG
TTTCCTCTCCCCTCTTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_f03.g1 MSMg01no397_f03.g1 CHROMAT_FILE:
MSMg01no397_f03.g1 PHD_FILE: MSMg01no397_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:43 2005
         (273 letters)



>mm_chr7_111551149_111551821
          Length = 673

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgcagagaatgttcatgcagagctagataatagtctgggaattttatagttttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtctgcagagaatgttcatgcagagctagataatagtctgggaattttatagttttaat 414

                                                                       
Query: 61  tcccgaacaagccttaagaacaaacagagaagacggtgggtgagtaaaatgtggaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcccgaacaagccttaagaacaaacagagaagacggtgggtgagtaaaatgtggaaaata 354

                                                                       
Query: 121 cagagacatggtagcccttgcttctcatccatgtacttgagagttggagaaagtagtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cagagacatggtagcccttgcttctcatccatgtacttgagagttggagaaagtagtatt 294

                                                                       
Query: 181 ccctggaattagagactgtcctaaaaacttagaaagctctagcccaggattgagtataga 240
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 293 ccctggaattagagactgtcctgaaaacttagagagctctagcccaggattgagtataga 234

                                            
Query: 241 gtaaatccctgcctcaaaaacaaattgttagtg 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gtaaatccctgcctcaaaaacaaattgttagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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