BAC Information

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BAC

Clone NameMSMg01-397N21
Chromosome7 (Build37)
Map Location 129,673,156 - 129,673,457
singlet/doubletsinglet
Overlap genePrkcb1
Upstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, LOC668486
Downstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N21.T7 (MSMg01no397_n21.b1)MSMg01-397N21.TJ (MSMg01no397_n21.g1)
ACCAG498106AG498107
length811810
length of high quality
(start - end)
375 (39 - 413)302 (69 - 370)
definitionCHROMAT_FILE: MSMg01no397_n21.b1 PHD_FILE: MSMg01no397_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:26 2005CHROMAT_FILE: MSMg01no397_n21.g1 PHD_FILE: MSMg01no397_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CAGGCAATATCCCCATTGTGTCAGCAGATGGGGATGGGACTAAGATGCAG
GGCTTTAAACAGCAGCCTGCACTCAAAGTCTAAGAGCAGAAATGGAGAAG
GGAGGCTGGGCAGCAGCATCTGTTCATCTCCCTCTTAGTCCTGATTATGG
AGGTCATGTGACCAGTTGCCTTCACCTCCCTGTGATGGGGAGCTGTCAAT
TGAACTGTGAGCTAAAATAAACCCTTGGTGCCTAAGTTGCTTTTGAATCA
GGATACTTCATCACAGCAATGAACAGAAGAGACTGAGACCAAGATTCTAA
AATTCTTGGCAAGAAAACCGTGTACTTGCAAAGGCCCATGCTTAAACTCC
GGATTCTGTGGCTGCCGGCGAAGCTGCTGTTGGGTGGTGAGGTGTTGCCC
CCATACCTTCCTTTACTTTCTTTTTCTTTTCTTCTCTCCCCCCCCCTTCC
CCATACTTCCCTTTCATTCTCCTTCTACTTATTTAATCTCTTGTTCTTTT
TTTCTTCCTCCCCCCCTCCCCTTCTTTTTATTTTCCCCTTTTCTCTCCTC
TTTCATCCCTTCTTCCCTCCCTTCTTCTCCCCCACTCTCTCCCCGTTTCC
TTTTCTCATCTTTTCCCTTCTCTTTTTTTCCCACCCTCCTTTTCTCTTCG
CTTTTCCTTTTTTTTTCATCCTCCTCTTTTTTCTTTTTTTTTTCCCCCCT
TCCCCTCCTTTTCTTCCCTTATCACTACTTCCTCTTTACTCTACTCCGAT
TATTCTCTTCC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGTGAGTTTGGGGAAGACGGTGAGGTCAGA
GGGTCTGGTTGGTATTGGCTTTAAGAAAGGCTTTGGTATTTACCCCAAGA
AGCATGTTAGCTTCCCACTCAACTAGACACACAGTACTTGAGTACCCGTG
GGTCTTCCACACAGCCTGGAGAATGGTAACGCTAACAATGCTGTGGGGTC
TCTGTGGACATGATTGGAATAAACACATTGGCCTTGGGGTTGCCAGTCAT
CCTCCCTCCCTCCGCTGTTTTTTTTTGAATCTGAAGTGTTCTCACAGGCT
TAGGGTTTGAACACTTAGTCCCTGGTGGTAACTCTGTTTTGTTAAGTTTT
AAGAACTACCCCCCCTCCAACAATTATCCCTTGGTTATTGCCTCTTTCAT
TCTCTTCGTCCCAACCCAATCTTGTATCTTTTTCTTTCTCCTCTTTTCAT
CCCTTCACCTTTTTTCCCTCTCCTTCCTTCCCCCTCGTTCTTTTCTTTTC
CTTTATCCCCCCTTTCCCCCCTTCCCTTTTCCTCTCGTTTCTTTCTTTCT
TTTCCTCCATTTTTCCTTTTTTCTTCCCCTCTTTCTTTACTTTCTACACT
ACCTTTCTCAATCTCTCTTTTTCCCTTTTTCCCATATTCACCTCCTCCAT
TCCCTCTTTCCCTTGTTCCATCCCATTTTCCTAATCTGTTTCTTTTTTCC
TCCTTTCTACCCGCCATCCTCTACTCCTCTCTTTCTTTCCTTTTCCCCTC
TCTTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n21.g1 MSMg01no397_n21.g1 CHROMAT_FILE:
MSMg01no397_n21.g1 PHD_FILE: MSMg01no397_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:26 2005
         (302 letters)



>mm_chr7_129672956_129673657
          Length = 702

 Score =  526 bits (272), Expect = e-154
 Identities = 294/308 (95%), Gaps = 12/308 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgagtttggggaagacggtgaggtcagagggtctggttggtattggctttaagaaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 caggtgagtttggggaagacggtgaggtcagagggtctggttggcattggctttaagaaa 260

                                                                       
Query: 61  ggctttggtatttaccccaagaagcatgttagcttcccactcaactagacacacagtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctttggtatttaccccaagaagcatgttagcttcccactcaactagacacacagtact 320

                                                                       
Query: 121 tgagtacccgtgggtcttccacacagcctggagaatggtaacgctaacaatgctgtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tgagtacccgtgggtcttccacacagcctggagaatggtaacgctaacaatactgtgggg 380

                                                                       
Query: 181 tctctgtggacatgattggaataaacacattggccttggggttgccagtcatcctccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctgtggacatgattggaataaacacattggccttggggttgccagtcatcctccctc 440

                                                                       
Query: 241 cctccgctg------tttttttttgaatctgaagtgttctcacaggcttagggtttgaac 294
           |||||||||      |||      ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccgctgccaccattt------gaatctgaagtgttctcacaggcttagggtttgaac 494

                   
Query: 295 acttagtc 302
           ||||||||
Sbjct: 495 acttagtc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)