BAC Information

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BAC

Clone NameMSMg01-398A09
Chromosome7 (Build37)
Map Location 5,696,424 - 5,696,763
singlet/doubletsinglet
Overlap genenone
Upstream geneSuv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627
Downstream geneLOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398A09.T7 (MSMg01no398_a09.b1)MSMg01-398A09.TJ (MSMg01no398_a09.g1)
ACCAG498225AG498226
length7541,532
length of high quality
(start - end)
360 (43 - 402)---
definitionCHROMAT_FILE: MSMg01no398_a09.b1 PHD_FILE: MSMg01no398_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:38 2005CHROMAT_FILE: MSMg01no398_a09.g1 PHD_FILE: MSMg01no398_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTAGATTTGCGGTCGCTAAACGACGCCTATTCCAAAACGATCCGCGGAAT
TCAGTGATTTTCCCTAAATGCAGAAACTAAAGGACAAACATTGGTGATAT
GTGATTTACTCTACTGGTCCCTGGGACTTGTCCAGCCTGCTTTCTTACAG
CTCCAGGATTGCCAGCCCTGGGGATGGCATCACTCACAGTCATCAAGGTC
CTGCAGATCAATCCTCAATCAAAAAATACACCACAAGCTTGTTCACAAAC
CTATATTCTGGTTCCCTATTGTCAAATGCCTATATTTTGGATCAGACACA
TTGACAGTACAAAAAGTTTTTTTTCTTCTTTGGATTGTCACTTCAGTTTT
TACTTTCATCATGAAAATCAAAACTGAGGCCATCGATTTCTATTTGACCT
AGCGGGCGAGTTTTGTTTTGTTTTTCATGTTAATTCTGCCTTTTTTCTAA
TTTAGATTATCTATTGCTAGATCTTTACATAGTGTGAAATTCTTAACATT
TCAGTTATCAGCGAATACCAGGTTGTATTCGCTACATAATGGAAGCTGCC
TAAAATGATACTGTAGTGAAAACCACTATTTAACAATCATGTGAGCTACT
GCATGCTTTTTGATTAACCCTTCCATTCATTTATATCCCACATGATACCA
TCCTTTCCTCGGTTCACCTCCCAAACCCTCCCATATTCTTATCATAAATT
CTCCCCCCTTCCAATGCGACCTTCTATGATGGTTTCTTTCCCCACCCACC
CCCG
AACACTCCCCCCTTAACGCACGCTTCAGGTGCGCGGTNCAGGGATAAGCC
TTCTTCCCAAACACAAATAAAGAGGGACAGATACTCAACTAGTATGTATT
TTCTCCCCCAGAAAAAAAAAGACATAGAAGTATAGACATTACGGTTATGC
AGGAACAACTGGAAGGAAGCGGCAGCTAGAGACAGCACATGCTTCTTAAC
GCATCCATTCCTCACGCACAGATGCGGACCGTAGAGATACAATTACAACG
ATCTCGCGTATTGTACTCGGTGCAGAGCGCGTCGCGTCTATCTATTTTGC
ACCACTTCGTCCGCCCTCTCGTATGCACCCATCCATCTCTATCCAGCCGC
GCATCTCTAATTCAATCCTTTGGGTATTGTTAGCGTTCACGATGGTNTAT
CCCTATTCTTATATACATATTTGTGTCTTCCTGAACGCATATTGTCGCTT
ATGATGGTGCGTGTGGAACAGACGAACACGATGATAAAGTCATACGGAGG
GGCGGGAGGGTCATGGAGAGCGGCAGGAGGTAGATAGGACGCGGCGGTGN
CGGTGCGGTTGGGTGGGGTGAGGGNAGGGAGTGTGTGTGTGTTTCGGGGG
AGGAGGAGAGCGAGAGAGGAGGGGAAAGAGAAGAAGAAGAGACGGGAGAN
ACGGGGCAGGAGGGAGAGAGATTGAGAGACGAAAGGAAGGAGGGCACGAA
ACGGACAGGATTGAGCGGTCGCTGGTGTCGTTGGTTTGGTGTACGAACGC
ATAGAGCATTGGTATTATTATGATGACAGACACTCATAAGATGNTAATAT
GAACGCCGCTCTTCGTCGCCTACGCCGGCACTATATCACACGCGATTATC
TCACTCTTCACCCGTGCGAGAACGTCTGCCATCGACGTAGGTCCTACGAC
GTGTTACGCAATATCTATAACGACACGACCTGATATACAGTGACGAGATA
CATACAGCACGTTATGTGACTCTACCGCCGATACGTTAATTATGAGATCG
ACTTACATACACGTTACNACCGGCACATAATGTACCAGCTGTCACACACA
TCCCACCACNGATCTACCGACGTCATGACGTATCTACATATACGCCACAC
GGGAGCTGCTTCATATAAACCAATCACACATCATACTCGATGCAAGTGCT
AGAGTAGTGAGTATATGTATAACCTAGCTAGCATAACTCTAGCCGCACCT
ATGCTCTATGGTAGTATGCATCAGACGCGGAGATAACGTTGTCTCAGNCT
CACGAACTCGTAATTCTAGTGCCTTTTCTCACGTCTCTATCGGCAGANTC
CCTCGACTAGAACGCCGTCAACCACGTGTATCTATTGCCACGTACGCGTA
TACACGAGCGCTCACTGCTCATATACGCCGCTCGCAGCGATGAATATACC
GTCCCACTCNAATCAAGACTAGAATATAATAGATGACGTATCATCAATAC
ACGAAGACCGAGCGCTCCAACGTTCGCGTCTATATACACGTATGTTTGTC
GTAGACCTCGGCGCCTATGCATCTCCCGTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_a09.b1 MSMg01no398_a09.b1 CHROMAT_FILE:
MSMg01no398_a09.b1 PHD_FILE: MSMg01no398_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:38 2005
         (360 letters)



>mm_chr7_5696012_5696771
          Length = 760

 Score =  572 bits (296), Expect = e-168
 Identities = 329/344 (95%), Gaps = 8/344 (2%)
 Strand = Plus / Minus

                                                                       
Query: 21  cctaaatgcagaaactaaaggacaaacattggtgatatgtgatttactctactggtccct 80
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 752 cctagatgcagaaactaaaggacaaacattggtgatatgtgatttactgtactagtccct 693

                                                                       
Query: 81  gggacttgtccagcctgctttcttacagctccaggattgccagccctggggatggcatca 140
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gggacttgcccagcctgctttcttacagctccaggattgccagccctggggatggcatca 633

                                                                       
Query: 141 ctcacagtcatcaaggtcctgcagatcaatcctcaatcaaaaaatacaccacaagcttgt 200
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctcacagtcatcaaggccctgcagatcaatcctcaatcaaaaaatacaccacaagcttgt 573

                                                                       
Query: 201 tcacaaacctatattctggttccctattgtcaaatgcctatattttggatcagacacatt 260
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcacaaacctaaattctggttccctattgtcaaatgcctatattttggatcagacacatt 513

                                                                       
Query: 261 gacagtacaaaaagttttt----tttcttctttggattgtcacttcagtttttactttca 316
           ||||||||||||||    |    ||||||||||| |||||||||||||||||||||||||
Sbjct: 512 gacagtacaaaaag----tcagctttcttctttgaattgtcacttcagtttttactttca 457

                                                       
Query: 317 tcatgaaaatcaaaactgaggccatcgatttctatttgacctag 360
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcatgaaaatcaaaactgaggccatcgatttctatttgacctag 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)