BAC Information

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BAC

Clone NameMSMg01-401K24
Chromosome7 (Build37)
Map Location 69,525,275 - 69,525,740
singlet/doubletsinglet
Overlap geneMagel2
Upstream geneB230209E15Rik, EG620934, LOC100041293, Ndn
Downstream geneMkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K24.T7 (MSMg01no401_k24.b1)MSMg01-401K24.TJ (MSMg01no401_k24.g1)
ACCAG501012AG501013
length792784
length of high quality
(start - end)
311 (71 - 381)466 (79 - 544)
definitionCHROMAT_FILE: MSMg01no401_k24.b1 PHD_FILE: MSMg01no401_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:22 2005CHROMAT_FILE: MSMg01no401_k24.g1 PHD_FILE: MSMg01no401_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATTAGTCCTACATTCACTCNNCGNNTCCTATTTCGAGAGGATCCGCG
GAATTCCTGATCTTTCCAGACTTTTATCATGAATGGGAGTTGGATTTTGT
CATATGCTTTCTCCTCATATAACGAGATGATCATGTGGCTTTTTTCTTTG
AGTTTGTTTATATAGTGGATTACATTGATGAATTTCCATATATTAAACCA
TTCATGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTT
TGATGTGTTCTTTGATTTGGTTAGCGAGAACTTTATTTATTTCCTGGGAC
AATTTCAATATTTTTGTATATCTTGATGATTTTTGCATTGATATTCACAA
GGGAAATTGTTCTGTAATTCTCTTTCTTTGATGGGTATTTCTGTGGTTTA
GGTATCAGAGTTATTGTGGCTTCATAGAATGAAAAGGGTAGAGTGCCTTC
TGCTTCTATTTTGTGGAATAGTTTGTGATAAACTGGAATTAGATCTTTTT
GACAGTCTGATAAAACTCTGCACTAACACCATCTGGTCCTGCGCTTTTTT
GGTTGGGAGAACACTAATGACCGCCGTCCATTTCTTTAGTGCAAAATACT
ACTCTTTTTATTATTTATCCCGCCTCTGATTATCTTTCTATACCTGCTCC
TCCGTCTACAAAATTTGGCCCTTTTCCTCCACCGTTCTCCAATCTTCTTT
TAAACATATACCCCTTTGCCTAAATAACCTATATTNCTTCCTTTTATATT
CCCCATTGCACTTTTTTATTTACTCCCTCCCCTCTTTCTTTG
NNGGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGTGACTCGGGTGGGTCTC
AGACATGGATGGCTTCTGAGGTCCCAAGCGTCTCTCGGGGATCCAGTGCT
GCTCAGGAGGACCCTGATAGGGAGAGTCAGCCCTTATCTCCCTTAGATGA
GAGAGCAAACGCTTTGGTGCAGTTTCTCTTGGTCAAAGACCAAGCCAAGG
TGCCTGTCCAGCTCTCGGAGATGGTAAATGTTGTCATCCGAGAATACAAA
GACGACAGCTTAGACATCATCAACCGTGCCATCTCTAAGCTGGAGTGCAC
CTTTGGTTGTCAACTGAAGGAAGTTGACACCAAAACCCACACTTACATCA
TCGTCAACAAGATGGCGTACCCTCAGTGTAATTTGCTGGCATCCTATTTA
GAGAGGCCAAAGTTCAGCCTCCTGATGGTGGTCTTGAGCCTCATCTTTAT
GAAAGGCTACTGTATCAGGGAGAATCTGCTCTTTAGTTTTCTGTTCCAGC
TAGGGCTGGATGTCCAGGAGACAAGTGGTCTCTTCAGAATTACAAAGAAG
CTCATCCCCAGTGTGTTTGTGAGACACAGGTACCTATAGTACAGGCAAAT
CCCGTTCCCTTGAGCCTGGAGATAACAAACTTCTCTGGGGGGCCCGGGGA
TTCCTCGAAACCCAAAGGTGGGCCTCTTGAGATTTTGGCGGGCCTCTATT
AAAACCACCCCCCAAACTGTTGTGGCGTAACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k24.g1 MSMg01no401_k24.g1 CHROMAT_FILE:
MSMg01no401_k24.g1 PHD_FILE: MSMg01no401_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:22 2005
         (466 letters)



>mm_chr7_69525075_69525940
          Length = 866

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggtgactcgggtgggtctcagacatggatggcttctgaggtcccaagcgtctctcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggtgactcgggtgggtctcagacatggatggcttctgaggtcccaagcgtctctcgg 260

                                                                       
Query: 61  ggatccagtgctgctcaggaggaccctgatagggagagtcagcccttatctcccttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatccagtgctgctcaggaggaccctgatagggagagtcagcccttatctcccttagat 320

                                                                       
Query: 121 gagagagcaaacgctttggtgcagtttctcttggtcaaagaccaagccaaggtgcctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagagcaaacgctttggtgcagtttctcttggtcaaagaccaagccaaggtgcctgtc 380

                                                                       
Query: 181 cagctctcggagatggtaaatgttgtcatccgagaatacaaagacgacagcttagacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctctcggagatggtaaatgttgtcatccgagaatacaaagacgacagcttagacatc 440

                                                                       
Query: 241 atcaaccgtgccatctctaagctggagtgcacctttggttgtcaactgaaggaagttgac 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaaccgtgccaacactaagctggagtgcacctttggttgtcaactgaaggaagttgac 500

                                                                       
Query: 301 accaaaacccacacttacatcatcgtcaacaagatggcgtaccctcagtgtaatttgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaaaacccacacttacatcatcgtcaacaagatggcgtaccctcagtgtaatttgctg 560

                                                                       
Query: 361 gcatcctatttagagaggccaaagttcagcctcctgatggtggtcttgagcctcatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatcctatttagagaggccaaagttcagcctcctgatggtggtcttgagcctcatcttt 620

                                                         
Query: 421 atgaaaggctactgtatcagggagaatctgctctttagttttctgt 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgaaaggctactgtatcagggagaatctgctctttagttttctgt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)