BAC Information

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BAC

Clone NameMSMg01-403A24
Chromosome7 (Build37)
Map Location 54,267,623 - 54,268,044
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174
Downstream geneTmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403A24.T7 (MSMg01no403_a24.b1)MSMg01-403A24.TJ (MSMg01no403_a24.g1)
ACCAG502062AG502063
length784793
length of high quality
(start - end)		520 (38 - 557)429 (68 - 496)
definitionCHROMAT_FILE: MSMg01no403_a24.b1 PHD_FILE: MSMg01no403_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:12 2005CHROMAT_FILE: MSMg01no403_a24.g1 PHD_FILE: MSMg01no403_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
AACTAAGAAAGAAAGCTTCCAGTCTCTGATGTTTCTTGATAGACAACTGC
TATTCCCTTCCATGTTGTCAACTACTCCTCACTCTGTCTGTAATTTGTTT
AAGCTGGATGGTTTCTTAATCTACAGTATTGACTGCCATCTCAAAGTTGG
ATATTTACTGGCTTTGGATATTACTTCTCTGGCTTTTCTCCCATCCACAT
GTAATCAATACACCTAGGTGATGATTCTGAGGGACTGCTCAAAGGAGAGG
GTTGGGTTCCAGGGCTTTGATGTTCTTAATAAGTTGCATGCCCTCTTCCA
CCCTGTATCACTTCCCCTGAAACACAAAACAGTTTTTCTTAGCATGCAAG
CTAGGCCTGACAATTAATTAATGATCATAAAAAGTGCATTATAAACACCT
GAAAATCTCTTTGTAAGACTCATCACCTTATACAGTTAATATTTCATGGG
GTCTGCTTAAATCCAACATAAATCCAACATAACTCACATACCATGGCAGT
GCAGATGACAAAAATTTATTGTTATCAACCTGATTCTGATCCATGGGGCC
ACAGAACAGACCCAGAGCTGAACTACACCCTGAAGGAATGGTGTACAGAT
TACTTATGGAATGGATTCTAAATGATGGGGGAAAAAAAAGGGGTGTAAAT
TGTCCAAACACGGTGGGTGAAAAAGAAAGTTTTCCCCACCGGTTACGAAA
AAATCCTAAGCTTTGCAAAAAAAATTACTATAAC

TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGCAGTGGTGAGCTGTCTGATGTGTAATCTG
AGACCCGAACTTCAGTCCTTGTAACTATTGAACCATTTCTCCCACCCCTA
CTTTTAATTTAAAAAATTTAAGTAACTACTTAGATGCTGAAGTTATCTTT
CTAGATGTATGTTCTGCCAAAACCCGACATGTGTGTATACAAAGTCTCTG
GGACAGTTAGGTATTCACGGCAGCATGCTTTAGAAGAGCAGAGGACTGGG
TCAGCTGAGAAGGCTCCTGCTTCCAAGTCCAACAAATGACTCGGAGGCTC
AGGACCCAGACAGTGAAAGGAGAGACCTGACTCCTGCGAGTTGTCCTCTG
ACCTCCATGCCTGCCGTGACATGTGCACCTACACTTACACCCCACCCCCA
ACCACACACACACACACACACACACACACACACACACACGCACCATAAAA
TGTAAGTCAGGAATTAACAAAGGAAAACAACATGCAACAGGTCATGAGTG
TCAGCTGGCTGGGGAACCATGGAGCGGGAGTTTGTATTCCCCACAAATAA
GGAACTAAATCTGTTCTTGCGCCTCGAATATTCCCCGACACCTTCTTTCA
TATAACGGCGCTCCCTATACAACACTCCTTTTTTTCTCCCCCGTTCTCCC
TCCCATATTATTCCTCCAACTTTGTTTTTCTTTCCCCCTTTTTATTCCTT
TCCCTCCTCCCTTCCACTCCCTAGATATTCTTATATTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_a24.g1 MSMg01no403_a24.g1 CHROMAT_FILE:
MSMg01no403_a24.g1 PHD_FILE: MSMg01no403_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:12 2005
         (429 letters)



>mm_chr7_54267423_54268251
          Length = 829

 Score =  816 bits (422), Expect = 0.0
 Identities = 422/422 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcagtggtgagctgtctgatgtgtaatctgagacccgaacttcagtccttgtaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcagtggtgagctgtctgatgtgtaatctgagacccgaacttcagtccttgtaacta 260

                                                                       
Query: 61  ttgaaccatttctcccacccctacttttaatttaaaaaatttaagtaactacttagatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaccatttctcccacccctacttttaatttaaaaaatttaagtaactacttagatgc 320

                                                                       
Query: 121 tgaagttatctttctagatgtatgttctgccaaaacccgacatgtgtgtatacaaagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagttatctttctagatgtatgttctgccaaaacccgacatgtgtgtatacaaagtct 380

                                                                       
Query: 181 ctgggacagttaggtattcacggcagcatgctttagaagagcagaggactgggtcagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggacagttaggtattcacggcagcatgctttagaagagcagaggactgggtcagctg 440

                                                                       
Query: 241 agaaggctcctgcttccaagtccaacaaatgactcggaggctcaggacccagacagtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaggctcctgcttccaagtccaacaaatgactcggaggctcaggacccagacagtgaa 500

                                                                       
Query: 301 aggagagacctgactcctgcgagttgtcctctgacctccatgcctgccgtgacatgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagagacctgactcctgcgagttgtcctctgacctccatgcctgccgtgacatgtgca 560

                                                                       
Query: 361 cctacacttacaccccacccccaaccacacacacacacacacacacacacacacacacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctacacttacaccccacccccaaccacacacacacacacacacacacacacacacacac 620

             
Query: 421 ac 422
           ||
Sbjct: 621 ac 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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