BAC Information

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BAC

Clone NameMSMg01-403J06
Chromosome7 (Build37)
Map Location 89,705,601 - 89,706,063
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneFsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403J06.T7 (MSMg01no403_j06.b1)MSMg01-403J06.TJ (MSMg01no403_j06.g1)
ACCAG502456AG502457
length750753
length of high quality
(start - end)
512 (43 - 554)464 (74 - 537)
definitionCHROMAT_FILE: MSMg01no403_j06.b1 PHD_FILE: MSMg01no403_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:55 2005CHROMAT_FILE: MSMg01no403_j06.g1 PHD_FILE: MSMg01no403_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTGGTTCCGGAGTTACATACAGTTGTGGAGTTATGGATAACTGTCTC
ATGGGTGCTGGGAATCGAGCCTGGTCTTCTGGAAGAGCGACTACTACGCT
AACTGCTGAGTCTTCCCTCCAGTTCTACTTTCCCTCTTTGTAAATGGAAA
CATGGAAGATGATATCTAACTCCCTTACCAGCTTAAGCGTGTGATACAGT
ACTGCTAACTATAAGCCCAATGTCCTGTGTCACATGCCACGAACTTTTTC
ACTGTGCATGGCAGGAACTTTACACTCACTGAACAGTCTCTTCCCCTCAG
TGTCCTGGGAGTCTTTGGCAGTCAGCACTGCTATCCCATTCATGGAACTG
GACTAGTGTGGATATTTCCTGTGCATAGAATTAGGTGACACTTGACCTTC
TATAACCGTCTGCATTCCCCCCCTACATCCAGACCTCAAGAAATGTTCAT
TCAGAAGAAGACAAGGATGGCAACTGGGACGCCTGGGGAGACTGGAGCGA
CTGCTCCCGGACCTGTGGCGGAGGAGTCTCCTATTCTTTGCGGAGATGTC
TGACTGGAAAGTAAGTGGTGACTTGGCTGCTGTGTGGAATGTGTCATTGA
CTGTGGATGAAAAAGCAAAAAGGGGCGCCCGGATGTTTTCCACTTGGGGC
TTAAGGCCACCCCCCCACGAGCTATCTCTCGCCACATGTTTCATGGGTAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAATTGAAACTTCTTGAGGTTAAGT
CTATTTTAAGTATGAGCTGAAGGCTTTTACCGTAAGATTGCATACATATA
CATATGAAAGAAGTATCAACACACACAAAGACACATATACACACAGTGGG
GGTGAGTGACTGAGATTGAGGGAGTGAACACCTTTCATGTACTTCCCACG
TTCACAGACAGCTTCTGAGTGAGCATGCCTTGGCTCTGGGCCCGTTTCTC
ACAAGTGCTGGTTTGAGCTCTTCGGGAAATATTTAGCAGCTGAAACAAAG
AAGGAGCAGAGCAAGAGATGTCGTGTGTGGCTCTTACCTTCGACCAGTCT
CCGGCAGCCAGCTGTGGGGGGCAGTCTGTCCTGGCACAGGACTTATGAGA
CGATGCCTTGGGTCCTTGGCACAGCTCATCCGACAAATTCAAAAAGCTGC
CATCAGTTAACAGCTGTCGACAGGTGACTCTCCGGTTCTGAGTTCCCCCA
CCGCATGTCCTGGAACACTAAGAGACAGGGAAGCAGGGGGGCTTACTTTC
TGGTAACGCAAAGCGGGACCATCACTTTTATTATAGGGTAAAATGGGCCG
CATTTTGCCACCCTGTTGTACCTGCTGGTACCCTTCCAAGTCCCAGCCCG
CATGCCAACCCCAATGAATTGACGCCTCGAACGCATGGGCCTCTTTTCCC
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_j06.g1 MSMg01no403_j06.g1 CHROMAT_FILE:
MSMg01no403_j06.g1 PHD_FILE: MSMg01no403_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:55 2005
         (464 letters)



>mm_chr7_89705400_89706263
          Length = 864

 Score =  861 bits (445), Expect = 0.0
 Identities = 459/465 (98%), Gaps = 4/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaaattgaaacttcttgaggttaagtctattttaagtatgagctgaaggcttttaccgta 61
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaaattgaaacttcttgaggtcaagtctattttaagtatgagctgaaggcttttaccgta 605

                                                                       
Query: 62  agattgcatacatatacatatgaaagaagtatcaacacacacaaagac--acatatacac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||
Sbjct: 604 agattgcatacatatacatatgaaagaagtatcaacacacacaaagacgtac--atacac 547

                                                                       
Query: 120 acagtgggggtgagtgactgagattgagggagtgaacacctttcatgtacttcccacgtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acagtgggggtgagtgactgagattgagggagtgaacacctttcatgtacttcccacgtt 487

                                                                       
Query: 180 cacagacagcttctgagtgagcatgccttggctctgggcccgtttctcacaagtgctggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 486 cacagacagcttctgagtgagcatgccttggctctgggcccgtttctcacacgtgctggt 427

                                                                       
Query: 240 ttgagctcttcgggaaatatttagcagctgaaacaaagaaggagcagagcaagagatgtc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttgagctcttcgggaaatatttagcagctgaaacaaagaaggagcagagcaagagatgtc 367

                                                                       
Query: 300 gtgtgtggctcttaccttcgaccagtctccggcagccagctgtggggggcagtctgtcct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgtgtggctcttaccttcgaccagtctccggcagccagctgtggggggcagtctgtcct 307

                                                                       
Query: 360 ggcacaggacttatgagacgatgccttgggtccttggcacagctcatccgacaaattcaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggcacaggacttatgagacgatgccttgggtccttggcacagctcatccgacaaattcaa 247

                                                        
Query: 420 aaagctgccatcagttaacagctgtcgacaggtgactctccggtt 464
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaagctgccatcagttaacagctgtcgacaggtgactctccggtt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)