BAC Information

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BAC

Clone NameMSMg01-404A10
Chromosome7 (Build37)
Map Location 74,865,195 - 75,055,491
singlet/doubletdoublet
Overlap geneTtc23, Dmn, LOC665319, LOC100041771
Upstream geneLass3, Adamts17, Lysmd4, Mef2a, EG665304, Lrrc28
Downstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404A10.T7 (MSMg01no404_a10.b1)MSMg01-404A10.TJ (MSMg01no404_a10.g1)
ACCAG502797AG502798
length795773
length of high quality
(start - end)
353 (64 - 416)307 (65 - 371)
definitionCHROMAT_FILE: MSMg01no404_a10.b1 PHD_FILE: MSMg01no404_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:32 2005CHROMAT_FILE: MSMg01no404_a10.g1 PHD_FILE: MSMg01no404_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,055,139 - 75,055,491)(74,865,195 - 74,865,501)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGAATATCCGCGGAATTCAGCAA
GCTTTTCTATTCTCAGCTATAAATAGAGGTGGTTTGTTGCGCGGCTCTCC
AGCCTTTAGGCGTGAAATGTTTGCCAGCATCTGTGCCATCATGTCCCTGC
TTCCGATTTGAGCTGCTGTCTTTGTTTTCTGTTGTATCTGCAGTTGTTCG
TTGATAAATATCTTCCATGTCAATGACGTAGAATCCGTATTGCCATTTGT
AATTAGAGCTCACATTAAGCTAAGTTTGTCAACATGGTTTACATAGAAAT
GTATGTAAATACATTTTCTTTTAGTATATATACATAGCTCTGGGAGACAG
GTGTTTCATCTGCCTTTGAAGTAGCTAAGAAATTTGCCCAAAGTCACGTG
TTCTGTGTTCAGATTGGAGCTTACAAGGTCCTGATGTGGAGTGTGTGAGT
TTTGAGTTTTAAGTTAAATGCTGCTGATTTGTTAGAAAGCCGATAATTGT
TCCTTAACAGCCCTAGCCTAAGTATTTATTCTTTTTCTATTGAGTCCACT
TTTTCCCAATTTCCCACCGCTACCTCCTTATCTTATTCTGTTTACACTTT
AAGTCCCATGATTGCTCTTCCACGTTTTATTATAACCTCCTCCCCTTTTT
TTCTACTTCCTCTATTTTTTCTCTATTTTATTCTCCTTATATACATATTA
CTTTTTCTTTTCTTTATTTTATATATATCCTATCCCATCTTCCCCCTCTT
ATTCTTAATACTCTTTTATTGTCTCTTCTCCTCCCCCTCCCCCCG
GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACTGGATACTTGCAATGTCAGCTTCCTCTTTACTT
TAGAAACAGAAATGCCTTTGGCGGCTGGATTGAAGAGGGAGGGGTGCATT
GCTCTCTTGCTACAATAGAGCACAGGGTGGAGAATGCTAGTACTGGGGCT
TGAAGGCCCTTTACATAGCACAACCTGACATCTCCAGTGCTTGCTCCCAA
TAGCTTCAATGAACATTTATTGGCTTTGACTCTGGCATTGTGTCTGTTTC
TAACAAAAGAATCAAAACACCACACTGATTTCTCACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACTCTCAATGTTTA
AGCCTATTCAGCTAAGTGAAGCAGAACATTGAATAATACTATGTACATCC
CTTAAACAAATATACAGCTATTAAAACAGCTTCTAGTACAAGCATTAATA
GGTTACTCTGCTCATTTAAAGGGTATTTTTGTTACATAGCCCACTGAGCG
TGACCCCTGGTTTTTCTGTCCCTGAATTGTCCCCTGTTTCTCTTTTTAAA
AGTTTTTTTTATGTCCTCGGCCGTCTTTATTTTTAAAACCTCTCTATGGC
TTCTTTCTCTCTCACCACTCTAATCTGTTTTTTTCCCTATCTCTCCCCCA
TTACTTTTTTTACATCTTTTTATTTCCCTCCCCTTGCCTCCCCCCTTTTT
TTCTTTCTTACTTTCTTATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_a10.b1 MSMg01no404_a10.b1 CHROMAT_FILE:
MSMg01no404_a10.b1 PHD_FILE: MSMg01no404_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:32 2005
         (353 letters)



>mm_chr7_75054939_75055691
          Length = 753

 Score =  644 bits (333), Expect = 0.0
 Identities = 348/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctataaatagaggtggtttgttgcgcggctctccagcctttaggcgtgaaatgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 553 cagctataaatagaggtggtttgttgcgcggctctccagcctttaggcgtgaaatatttg 494

                                                                       
Query: 61  ccagcatctgtgccatcatgtccctgcttccgatttgagctgctgtctttgttttctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccagcatctgtgccatcatgtccctgcttccgatttgagctgctgtctttgttttctgtt 434

                                                                       
Query: 121 gtatctgcagttgttcgttgataaatatcttccatgtcaatgacgtagaatccgtattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtatctgcagttgttcgttgataaatatcttccatgtcaatgacgtagaatccgtattgc 374

                                                                       
Query: 181 catttgtaattagagctcacattaagctaagtttgtcaacatggtttacatagaaatgta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 373 catttgtaattagagctcacattaagctaagtttgtcaacgtggtttacatagaaatgta 314

                                                                       
Query: 241 tgtaaatacattttcttttagtatatatacatagctctgggagacaggtgtttcatctgc 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtaaatacatagacttttagtatatatacatagctctgggagacaggtgtttcatctgc 254

                                                                
Query: 301 ctttgaagtagctaagaaatttgcccaaagtcacgtgttctgtgttcagattg 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctttgaagtagctaagaaatttgcccaaagtcacgtgttctgtgttcagattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no404_a10.g1 MSMg01no404_a10.g1 CHROMAT_FILE:
MSMg01no404_a10.g1 PHD_FILE: MSMg01no404_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:32 2005
         (307 letters)



>mm_chr7_74864995_74865701
          Length = 707

 Score =  532 bits (275), Expect = e-155
 Identities = 299/307 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactggatacttgcaatgtcagcttcctctttactttagaaacagaaatgcctttggcgg 60
           ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct: 201 cactgaatacttgccatgtcagcttcctctttactttagaagcagaaatgccttttgtgg 260

                                                                       
Query: 61  ctggattgaagagggaggggtgcattgctctcttgctacaatagagcacagggtggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggattgaagagggaggggtgcattgctctcttgctacaatagagcacagggtggagaa 320

                                                                       
Query: 121 tgctagtactggggcttgaaggccctttacatagcacaacctgacatctccagtgcttgc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgctagtactggggcttgaaggccctttacatagcacagcctgacatctccagtgcttgc 380

                                                                       
Query: 181 tcccaatagcttcaatgaacatttattggctttgactctggcattgtgtctgtttctaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tcccaatagcttcaatgaacatttattggctttgactctggcattgtgtctgtttttaac 440

                                                                       
Query: 241 aaaagaatcaaaacaccacactgatttctcacacacacacacacacacacacacacacac 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aaaagaatcaaaacaccacactgatttcacacacacacacacacacacacacacacacac 500

                  
Query: 301 acacaca 307
           |||||||
Sbjct: 501 acacaca 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)