BAC Information

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BAC

Clone NameMSMg01-404P12
Chromosome7 (Build37)
Map Location 135,209,446 - 135,209,857
singlet/doubletsinglet
Overlap geneItgam
Upstream geneAI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675
Downstream geneItgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P12.T7 (MSMg01no404_p12.b1)MSMg01-404P12.TJ (MSMg01no404_p12.g1)
ACCAG503510AG503511
length794802
length of high quality
(start - end)
240 (59 - 298)428 (67 - 494)
definitionCHROMAT_FILE: MSMg01no404_p12.b1 PHD_FILE: MSMg01no404_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005CHROMAT_FILE: MSMg01no404_p12.g1 PHD_FILE: MSMg01no404_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAAACGACNCACTAATCAATAAATCCGCGGAANCACTTTGTTGC
TAGAACTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGC
TGGGATTAAAGGTGTGTGCCACCACACCCGGCCTCAATACATGATTTTAA
CTGTTTTTCTTTTATGAACTTGGGAGCCCTTGTATTTGGTACATAATGTT
TAGAATGGCAATATCTTCTTGGTGGATTTTCCCTTGTATGAGCATGAAGT
ATCCTTCCCTATCTATTTTGATTCATTTTGGTGTGAAGTCTATTTTGTCA
GATATCATAATGGCTATGTCTCCATTTTAATGCTAACTTCTTGTTTCTAC
TTGCTTGTAAAACATTTTCTCACCTTTTAGTCCTAGGTGATGTCCTTGAC
CCCCAAATGTGTTTCTTCTATGCATTATTGTGTCCACAGACAGCCTGGCC
CCCGGTTGAGCCCAGGTTTGTAACCCCAGTGATCCGTATGGTGCTGACTT
CCACCCTGTATGTCTATATAATTTTTTGCTTCCCTTCTCTTGTTTCTCCT
TTCCCCGCGTTTTCTTTTTTCTTTCCCCCCCCCCTCCTTCTTTTTTTTTA
TCTCTTCTATTTCTCTCTCTCTATTCCCCCCCTTTTTCTATCTATTTTTT
CTTTTTTTTATCCCCCCCCCTTTTATTTCTCCCCCCCTCATTTATTTCCT
CACCTTCACCCCTCCCTCCCTCTTTATCCTCCCCCCCTTCCCCCTTTATC
TCTATTCCTCTCTCCCCTCCCCCCCTCTCTTAATATATCTCTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGATTTAAACTCAGGTCTTCATGCTTGTGTAGA
AACCACTTTACCAACTGAGTTTGTTTTTTCCTTGTCCCTACAGTGAAAAT
GAAATCATAATGTATCAAATCTATCCATGTTGTTTTATATCATATAGAAT
AAAATCATGACTTTTCATTTAAAGGAAATCTTTCTCTGATTCATTTCTTT
GTCTACCATTCAATTAGACATCACTTTCAAACATGGCTGCTTCCTTCTAC
AAAGTAACTTTACCTTCTGACTAGTACTGTTAACTGGGACAAGATTCCTG
CATCTAGGAAGTCATAGGCCTGAAAGGAGAACCTACTACTAGTAGTCTAC
TAAGTGGACAGAGCACTAAACTTCTTTCTAAGTACTGAACATTACACCCT
CAGCGAATCTCTCAATCCTCATGAGAGAAGCTTCTTTTTAAATAGATGGT
AATTTGCAGAGACTCACTAATGATCCGTACATTCTGAATATTATACCGCG
AGTGTTCAGCTCTTTAATAAAACAGCTATACTAAATACTTCCTCCCCAGG
TCTCGGAATTATTAAATAAAATGCAATTGTTTATAACCTTGTTACCCCCC
ATCTCTTTTTTTATTAATCCCTGAGCCCCTGGTTTTCTCAAATTTTGATA
AAATCATTTTTCATTTCCTCAACCTCTTTCTATTGGTAAATATAAAGTTA
TGCCTTTCCTTTCTTTATAATAAATATATTTTTTTGTTAGAATTCACCAA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p12.g1 MSMg01no404_p12.g1 CHROMAT_FILE:
MSMg01no404_p12.g1 PHD_FILE: MSMg01no404_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:49 2005
         (428 letters)



>mm_chr7_135209446_135210273
          Length = 828

 Score =  746 bits (386), Expect = 0.0
 Identities = 405/412 (98%), Gaps = 3/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatttaaactcaggtcttcatgcttgtgtagaaaccactttaccaactgagtttgttt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gagatataaactcaggtcttcatgcttgtgtagaaaccactttaccaactgagtttgttt 353

                                                                       
Query: 61  tttccttgtccctacagtgaaaatgaaatcataatgtatcaaatctatccatgttgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttccttgtccctacagtgaaaatgaaatcataatgtatcaaatctatccatgttgtttt 293

                                                                       
Query: 121 atatcatatagaataaaatcatgacttttcatttaaaggaaatctttctctgattcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 292 atatcatatagaataaaatcatgacttttcatttaaaggaaatctttctctgattcatca 233

                                                                       
Query: 181 ctttgtctaccattcaattagacatcactttcaaacatggctgcttccttctacaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ctttgtctaccattcaattagacatcactttcaaacatggctgcttccttctacaaagta 173

                                                                       
Query: 241 actttaccttc-tgactagtactgttaactgggacaagattcctgcatctaggaagtcat 299
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 172 actttaccttcatgactagtactgttaactgggacaagattcctgcagctaggaagtcat 113

                                                                       
Query: 300 aggcctgaaaggagaacctactactagtagtctactaagtggac--agagcactaaactt 357
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 112 aggcctgaaaggagaacctactactagtagtctactaagtggacagagagcactaaactt 53

                                                               
Query: 358 ctttctaagtactgaacattacaccctcagcgaatctctcaatcctcatgag 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ctttctaagtactgaacattacaccctcagcgaatctctcaatcctcatgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)