BAC Information

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BAC

Clone NameMSMg01-406K23
Chromosome7 (Build37)
Map Location 113,959,577 - 113,960,097
singlet/doubletsinglet
Overlap geneOlfr701
Upstream geneMrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700
Downstream geneOlfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K23.T7 (MSMg01no406_k23.b1)MSMg01-406K23.TJ (MSMg01no406_k23.g1)
ACCAG504821AG504822
length731736
length of high quality
(start - end)
522 (80 - 601)491 (82 - 572)
definitionCHROMAT_FILE: MSMg01no406_k23.b1 PHD_FILE: MSMg01no406_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:05 2005CHROMAT_FILE: MSMg01no406_k23.g1 PHD_FILE: MSMg01no406_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTTTCTCTACCCCTGTACACATGCCCTGATCTTTCTC
TTTAGAGGACAAAATGAAGAGGCAATGATCAGGATAGGAGGAAAGCATGA
ATCTTGATTGAAAGTGAAGTAGGTAAGACTTTGCCCTCACTTATATCACC
TTACTACTCCCCTGTTCTTCTGCTTTCAGACCTTAAACAGTAATCTGAAA
TAATGTCCCAGGTAATTTTTTTTCCTCCTTTTGTTTTTCTATCCATAAAT
TTTCTATAAAATTTATACAAGGGTGTATTTTCAAGTGTCACATGTGCCAG
AAACTCTGCGCCAAGATGTTTTTTTGGTTTTGTTTTTTCTTTCTTTCTTT
CTTGGTTTAGATAAACAAAGAGCTTCCAACACGGTTTCTGTGTTAAGACC
TGTTTCTGTCTGTTCGACACTGTGGTAACAGGTATCATATGATATGACAT
AGAGGAAGGGAAAGGTTAGGTACCAAGGCATTTCCCAGGCAGGCATCTGT
ACCTGGTTTAGGATATGAGGAGTCCAGGGGGATGTGCTGCACTGCTTTTC
CATGCCCTGACCTTCATAGTGCCATCTTCCATCTCCTTCTGCACTGGTGG
GCTTTTTGACTTTAAGAGAATTTATTTGGATGTAACCCAACCCTCATGTG
AAACTTCCTTGGGAAACCCTTTCTGAAACCC
NNNCCTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCTAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGGAACAAATTCACAAAGGAACTCACACAATATGGACTCACT
GAGAAGTGGATATTAGCCCCAAACCTAGGATACCCCAGATATTAGGAACC
ATTTTCTAAACACATGAGACTCCAGAAAAAGGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k23.b1 MSMg01no406_k23.b1 CHROMAT_FILE:
MSMg01no406_k23.b1 PHD_FILE: MSMg01no406_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:05 2005
         (522 letters)



>mm_chr7_113959377_113960297
          Length = 921

 Score =  971 bits (502), Expect = 0.0
 Identities = 517/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacatgccctgatctttctctttagaggacaaaatgaagaggcaatgatcaggatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacatgccctgatctttctctttagaggacaaaatgaagaggcaatgatcaggatagga 260

                                                                       
Query: 61  ggaaagcatgaatcttgattgaaagtgaagtaggtaagactttgccctcacttatatcac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggaaagcatgaatcttgattgaaagtgaagtaggtaagattttgccctcacttatatcac 320

                                                                       
Query: 121 cttactactcccctgttcttctgctttcagaccttaaacagtaatctgaaataatgtccc 180
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 321 cttactactcccctgttcttctgctttcagaccttgagcagtaatctgaaataatgtccc 380

                                                                       
Query: 181 aggtaattttttttcctccttttgtttttctatccataaattttctataaaatttataca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtaattttttt-cctccttttgtttttctatccataaattttctataaaatttataca 439

                                                                       
Query: 241 agggtgtattttcaagtgtcacatgtgccagaaactctgcgccaagatgtttttttggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agggtgtattttcaagtgtcacatgtgccagaaactctgcgccaagatgtttttttggtt 499

                                                                       
Query: 301 ttgttttttctttctttctttcttggtttagataaacaaagagcttccaacacggtttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgttttttctttctttctttcttggtttagataaacaaagagcttccaacacggtttct 559

                                                                       
Query: 361 gtgttaagacctgtttctgtctgttcgacactgtggtaacaggtatcatatgatatgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgttaagacctgtttctgtctgttcgacactgtggtaacaggtatcatatgatatgaca 619

                                                                       
Query: 421 tagaggaagggaaaggttaggtaccaaggcatttcccaggcaggcatctgtacctggttt 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 tagaggaagggaaaggttaggtaccaaggcatttcccaggctggcatctgtacctggttt 679

                                                     
Query: 481 aggatatgaggagtccagggggatgtgctgcactgcttttcc 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggatatgaggagtccagggggatgtgctgcactgcttttcc 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space:   466432
Effective search space used:   466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)