Query= MSMg01no406_l23.b1 MSMg01no406_l23.b1 CHROMAT_FILE:
MSMg01no406_l23.b1 PHD_FILE: MSMg01no406_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:10 2005
(497 letters)
>mm_chr7_89190945_89191847
Length = 903
Score = 803 bits (415), Expect = 0.0
Identities = 437/449 (97%), Gaps = 11/449 (2%)
Strand = Plus / Plus
Query: 1 ggaggagaccctgtcagagaccaaatgctgctggcttgtgtatgtccataatagaga--- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaggagaccctgtcagagaccaaatgctgctggcttgtgtatgtccataatagagacaa 260
Query: 58 ---tcccgagtgaattccctgcatgttcccatgtgtaattgttcttggaatcagcaaaga 114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcccgagtgaattccctgcatgttcccatgtgtaattgttcttggaatcagcaaaga 320
Query: 115 attttaagtagctaaaatggtcgcaaggccctacctaggatgcccttttccaactctgag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttaagtagctaaaatggtcgcaaggccctacctaggatgcccttttccaactctgag 380
Query: 175 gctgagtaggactctcttagactggactgttctccgtaagcaatcccatttctgctttta 234
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgagtaggactttcttagactggactgttctccgtaagcaatcccatttctgctttta 440
Query: 235 ctgtgaactttgattcatgggctttttcacgaaaaagctgaccctttaaaaacacaaaga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgaactttgattcatgggctttttcacgaaaaagctgaccctttaaaaacacaaaga 500
Query: 295 ggccaggcgtggtggcgcacacctttaatcccagcactcgggaggcagaagctacaaagt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccaggcgtggtggcgcacacctttaatcccagcactcgggaggcagaagctacaaagt 560
Query: 355 gagttccaggacagtcagggctatacagagaaaccctgtctcgaaaaaccaaaccaaacc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagttccaggacagtcagggctatacagagaaaccctgtctcgaaaaaccaaaccaaacc 620
Query: 415 aaaccaaa-ccaaaccaaaccaaaccaaa 442
|||||||| |||| |||| ||||||||
Sbjct: 621 aaaccaaaaccaa--caaa--aaaccaaa 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 903
Length adjustment: 10
Effective length of query: 487
Effective length of database: 893
Effective search space: 434891
Effective search space used: 434891
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_l23.g1 MSMg01no406_l23.g1 CHROMAT_FILE:
MSMg01no406_l23.g1 PHD_FILE: MSMg01no406_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:10 2005
(514 letters)
>mm_chr7_89386627_89387543
Length = 917
Score = 930 bits (481), Expect = 0.0
Identities = 504/513 (98%), Gaps = 3/513 (0%)
Strand = Plus / Minus
Query: 2 agggatggaacctgagttgtcacaattgtgcggtgaggatgcttccctgctgagccaact 61
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct: 513 agggatggaacctgagttgtcacaactgtgcggtgagggtgcttccctgctgagccagct 454
Query: 62 ccatggccccaagaaccttcattttatataaaaatgcacattaaccagtctttgacatag 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 ccatggccccaagaaccttcattttatataaaaatgcacattagccagtctttgacatag 394
Query: 122 gtagctcctttaacatagac---gttttatagatttgagataatactgaaaactaggaaa 178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtagctcctttaacatagacagtgttttatagatttgagataatactgaaaactaggaaa 334
Query: 179 tgtgaaatattaacactggcttagctatatgctaggcaaagcccctctattccctccctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgtgaaatattaacactggcttagctatatgctaggcaaagcccctctattccctccctg 274
Query: 239 aggtaatcagtctcagacaattctctcttctgtctttttctcgtttggttttgggggtct 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atgtaatcagtctcagacaattctctcttctgtctttttctcgtttggttttgggggtct 214
Query: 299 tgattgttttgctttgttttctaagacagaatcttgctatgagacctggctgatctctaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgattgttttgctttgttttctaagacagaatcttgctatgagacctggctgatctctaa 154
Query: 359 ctcatgactctcctgcctctgcttcctacctgcagatgacaaaaaaacgagccaccacac 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 153 ctcatgactctcctgcctctgcttcctacctgcaggtgacaaaaaaacgagccaccacac 94
Query: 419 cttggtcatgtcatcttacatctacagagcgatgcattcttttacactatgacagtaagt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 cttggtcatgtcatcttacatctacagagcgatgcattcttttacactatgacagtaagt 34
Query: 479 catacatattgatctgtaagctttccaggaaaa 511
|||||||||||||||||||||||||||||||||
Sbjct: 33 catacatattgatctgtaagctttccaggaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 917
Length adjustment: 10
Effective length of query: 504
Effective length of database: 907
Effective search space: 457128
Effective search space used: 457128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
