BAC Information

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BAC

Clone NameMSMg01-407J02
Chromosome7 (Build37)
Map Location 137,243,188 - 137,243,641
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043144, Ppapdc1a, Brwd2, LOC100043150
Downstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407J02.T7 (MSMg01no407_j02.b1)MSMg01-407J02.TJ (MSMg01no407_j02.g1)
ACCAG505496AG505497
length751771
length of high quality
(start - end)
618 (44 - 661)455 (72 - 526)
definitionCHROMAT_FILE: MSMg01no407_j02.b1 PHD_FILE: MSMg01no407_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:14 2005CHROMAT_FILE: MSMg01no407_j02.g1 PHD_FILE: MSMg01no407_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACCAGATTTTCAAAGAAGAGCTAATACCAATACTTCTCAAACTATT
CCACAAAATAGAAACAGAAGGAACACTGTCCAACTCATTCTATGAGGCCA
CAGTCACCCTGATACCTAAACCCCACAAAGACTCAAGAAAGAAAGAGAAT
TTCAGATCAATGTCCCGTATGAACATTGATGCAAAAATACTTAGCATTTG
CAAACTGAATCCAAGAATACATCAAACACATCATTCACCGTGATCAGGTT
AGCTTCATCCCTACAGGGAGTGCAGGCATGGTTCAATATACAAAATCCAT
CAATGTAATTCACCATATAAATAAACTGAATGAAAACAACCACATGATCA
TCTCACTAGATGCTGAGAAAAACCTCTGACAAAATCCAACACCCCTTCAT
GTTGAAAGTCTTAGAGAGATCAGGGATACAAGGCACATAACTAAACACAA
TAAAGGCAATATACATCAAGCCAATAGCCAACATCAAATTAAATGGAAAG
AAACTTANAGCAATTCCACTAAAATCAGGGACAAGAAAAGGCTGCCCACT
CTCTGTATCTATTCAATATAGTACTGAAGTTCTAGCTAGAGCAGTAAGAC
AACTAAAGGAGAGGAAGGAGATAGGAATTGGAAAAGAAAAATCAAATTAT
CACTACCTGCCGAATACATGATAGTATATATAACTGAGCTCAACAAGTCT
N
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACATCGTGTCTGGCACACAGGCGGCTC
TTTCATGTGCTCCTTTGATTTTGCGTTCTGCCTCTCTGGGTCTTTGTAGT
TGAAAAGGTGCCGCGTTCCTCATCAACAAGAGTTCTGCCGAGATGTGCAG
CAGCGTTGTTCCCAGAAGCAGGACTGGGGCTGCCTGGTCTTCAGTGGTGA
AGGCCTTGAACCCAGGTGGTGTCTATAGGGCTCCAACCTTGGTGTGGCTT
GCTCTCTGGGGCAGACCTGTCGGCACCTCTGTGTGTCACATCCCTTCCTT
TGGAAGCATCAGCCTGAGTGGCTCTCTGAGCCCCTCCGTTGCCCATCACT
ATCCTTGCTAGTCATGTGCACGGCCACATCCGGCCAAGGCAGTCCTAAAG
ATTAAACTCCAGTGCCCCAGCACCTGCCTTCCTGTCCCCCTACCTTCATA
GTGAGCTGCTGACTGACTTGTTTCGCGCTCACAATATCAGCAGTGTATTG
TCACATGGTTCTAGGATCCCAGAAATCTGAAATCAAGGCATTGGTTCCCT
CTAAAGGCTAATGGGGAGCCCTCTCCTATCTAATTCCAGTTTTTTGAGCG
ATTGCCCCTCTCCATGATGTAGTTAATATCTCTCCCCTTCTGCCTCCTTG
TGCGCCCCCCTTTTTCTGGCTCTTTTTTTTCATTTCCCCTGTAACCTAAC
CTTCTTAGTTAATATTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_j02.g1 MSMg01no407_j02.g1 CHROMAT_FILE:
MSMg01no407_j02.g1 PHD_FILE: MSMg01no407_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:15 2005
         (455 letters)



>mm_chr7_137242988_137243842
          Length = 855

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatcgtgtctggcacacaggcggctctttcatgtgctcctttgattttgcgttctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acacatcgtgtctggcacacaggcggctctttcatgtgctcctttgattttgcgttctgc 595

                                                                       
Query: 61  ctctctgggtctttgtagttgaaaaggtgccgcgttcctcatcaacaagagttctgccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctctctgggtctttgtagttgaaaaggtgccgcgttcctcatcaacaagagttctgccga 535

                                                                       
Query: 121 gatgtgcagcagcgttgttcccagaagcaggactggggctgcctggtcttcagtggtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gatgtgcagcagcgttgttcccagaagcaggactggggctgcctggtcttcagtggtgaa 475

                                                                       
Query: 181 ggccttgaacccaggtggtgtctatagggctccaaccttggtgtggcttgctctctgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggccttgaacccaggtggtgtctatagggctccaaccttggtgtggcttgctctctgggg 415

                                                                       
Query: 241 cagacctgtcggcacctctgtgtgtcacatcccttcctttggaagcatcagcctgagtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagacctgtcggcacctctgtgtgtcacatcccttcctttggaagcatcagcctgagtgg 355

                                                                       
Query: 301 ctctctgagcccctccgttgcccatcactatccttgctagtcatgtgcacggccacatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctctctgagcccctccgttgcccatcactatccttgctagtcatgtgcacggccacatcc 295

                                                                       
Query: 361 ggccaaggcagtcctaaagattaaactccagtgccccagcacctgccttcctgtccccct 420
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggccaaggcagtcgtgaagattaaactccagtgccccagcacctgccttcctgtccccct 235

                                             
Query: 421 accttcatagtgagctgctgactgacttgtttcg 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 accttcatagtgagctgctgactgacttgtttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)