BAC Information

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BAC

Clone NameMSMg01-407M22
Chromosome7 (Build37)
Map Location 26,115,720 - 26,116,214
singlet/doubletsinglet
Overlap geneMegf8
Upstream gene1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145
Downstream geneCnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407M22.T7 (MSMg01no407_m22.b1)MSMg01-407M22.TJ (MSMg01no407_m22.g1)
ACCAG505676AG505677
length751749
length of high quality
(start - end)		499 (48 - 546)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no407_m22.b1 PHD_FILE: MSMg01no407_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:33 2005CHROMAT_FILE: MSMg01no407_m22.g1 PHD_FILE: MSMg01no407_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACTGATCTCTTCCACGTGGAACGGCGTGTGTGGACCACGCTG
AAGGGCCGGGATGGGCTCCAGGGTCCACGGGAGAGAGCCTTCCACACTGC
CAGTGTTCTAGGAAACTACATGGTGGTCTATGGTGAGGTGATTTCCCTAG
ATCCTGTCTGCCTTCCAGGGGCCTGAGCCCACCCTGAGCTGAAACTGAGC
CTGGACAACCCTACCTCCCCCAAGGCTTGCCTGAGCCCACCCAGAGATGA
GACTCAGCCTGGGTCTCCTCCCTCTCCTGAGGCTTGCCAGCGGTGCCCTT
TCCTCTTTTCCCAGGGGGCAATGTGCATACGCATTACCAGGAGGAAAAGT
GTTACGAAGATGGCATCTTCTTCTACCACCTTGGCTGCCACCAGTGGGTG
TCAGGGGCTGAGCTTGCCCCGCCAGGAACCCCTGAGGGTGAGTCTCCTCT
GTTTTCCTGAGGGCTTTTGAAGATCTCTGAGTTTTAGCAGGAGATGCCTC
AGTCATTACCTTGGTGGGCCAGGCATCCTGTTGGAATGACCTCTGGAGAA
AAGCCTCCGGGAGGACAAGGTGGTGGACCCGCAAGCCAATGTAAGGCACT
GAATATTGGGTTATACTTTTTATTTTTAAAATGCCCAGTGTGTTGATGGG
TAGTGATGCTGCGTGCTTGTTTTCTAATTGACCTTTTTAATACCCATTCT
A

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGAGAGAATGAGTAGAGGCAA
GATAACTAAAATACAGACTATCATTGGCTCAATATGATCTATATGTGCTT
CTTGTAGATTCTTTTTTACCCAAGCCAATTATTTTTCAGCTTCAGTTGAT
AATCTTTTTGTACTATTTACGTCTTCATCACCTTGTAAGGTTTGAAATAA
ATTGTTTACCTCTTGACTAGTAAAACCAATTGTAGGGTGTAGCCAGTTAG
TATCTCCCAGCAATTTTTGAAAATTGTTAAGAGTTCTGAATTGGTTTCTT
CTCATTTGTACCTTCTGTAGTAGAATTTGCTGTAGATTTATCTTATGTCC
CAGGTAAGTAACAGGATCTCTTCTTTGTATTTTTCAAGAGCAAGTTATAA
ACCCCTATAAGGCAAAAGTCTTTTTGCTTCATTAGATATTCTTTCTAAGG
TATCTTCATTTGATTCAGCTAGCAAAATATCATCCATATAATGGTAAATT
ATGGATTAAGGAAATGCTTACGGATTATTCCCATGGATGTTATACAAAAT
ATTGGCATAATGGAAGAATATATCACATTCCTTGTTTTCGGAACCCCCCG
GGTATTTTTCAACTGACTTAAATGGCTAAAGGGGGCCTTGTTAAATAAAT
CTTTTACTATACCTGGAAAAAAATGGGAAAAAACCACCTTTCTAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_m22.b1 MSMg01no407_m22.b1 CHROMAT_FILE:
MSMg01no407_m22.b1 PHD_FILE: MSMg01no407_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:33 2005
         (499 letters)



>mm_chr7_26115516_26116414
          Length = 899

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactgatctcttccacgtggaacggcgtgtgtggaccacgctgaagggccggga 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactgagctcttccacgtggaacggcgtgtgtggaccacgctgaagggccggga 264

                                                                       
Query: 65  tgggctccagggtccacgggagagagccttccacactgccagtgttctaggaaactacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggctccagggtccacgggagagagccttccacactgccagtgttctaggaaactacat 324

                                                                       
Query: 125 ggtggtctatggtgaggtgatttccctagatcctgtctgccttccaggggcctgagccca 184
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 325 ggtggtctatggtgaggtgatttccctagatcctgtctgaattccaggggcctgagccca 384

                                                                       
Query: 185 ccctgagctgaaactgagcctggacaaccctacctcccccaaggcttgcctgagcccacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctgagctgaaactgagcctggacaaccctacctcccccaaggcttgcctgagcccacc 444

                                                                       
Query: 245 cagagatgagactcagcctgggtctcctccctctcctgaggcttgccagcggtgcccttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagatgagactcagcctgggtctcctccctctcctgaggcttgccagcggtgcccttt 504

                                                                       
Query: 305 cctcttttcccagggggcaatgtgcatacgcattaccaggaggaaaagtgttacgaagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctcttttcccagggggcaatgtgcatacgcattaccaggaggaaaagtgttacgaagat 564

                                                                       
Query: 365 ggcatcttcttctaccaccttggctgccaccagtgggtgtcaggggctgagcttgccccg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcatcttcttctaccaccttggctgccaccagtgggtgtcaggggctgagcttgccccg 624

                                                                       
Query: 425 ccaggaacccctgagggtgagtctcctctgttttcctgagggcttttgaagatctctgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaggaacccctgagggtgagtctcctctgttttcctgagggcttttgaagatctctgag 684

                          
Query: 485 ttttagcaggagatg 499
           |||||||||||||||
Sbjct: 685 ttttagcaggagatg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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