Query= MSMg01no407_p17.b1 MSMg01no407_p17.b1 CHROMAT_FILE:
MSMg01no407_p17.b1 PHD_FILE: MSMg01no407_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:48 2005
(506 letters)
>mm_chr7_120640808_120641713
Length = 906
Score = 870 bits (450), Expect = 0.0
Identities = 489/502 (97%), Gaps = 3/502 (0%)
Strand = Plus / Plus
Query: 5 gaattccttccttttacattgtacatgaccacttaacccctcctcaaaatgctctctgga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccttttacattgtacatgaccacttaacccctcctcaaaatgctctctgga 264
Query: 65 agctgttgtctctgccagggccttagctcagtttccctaaccattttggtccttttctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctgttgtctctgccagggccttagctcagtttccctaaccattttggtccttttctgg 324
Query: 125 gtttgctcaagataggaaaggtgagggagaaactaagccagaggggctggagatatgacg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 gtttgctcaagataggaaaggtgagggagaaactaagccagaggggctggagatatgatg 384
Query: 185 cagccattaagaacatttatgctcttgcagaagagttgggtgtgtttcccaatatctcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagccattaagaacatttatgctcttgcagaagagttgggtgtgtttcccaatatctcca 444
Query: 245 tggcagcccccacacatctataattcttattccaggtcatctgatccgttgtctggcttc 304
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcagcccccacgcgtctataattcttattccaggtcatctgatccgttgtctggcttc 504
Query: 305 tgcaaacacaaggcttgcccatggtgtatgtgtgtgtgtaaatatatgtaggtaaacatt 364
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 505 tgcaaacacaaggcttgcccatggtgtatgtgtgtctgtaaatacatgtaggtaaacatt 564
Query: 365 caaacacattcaagaaaaaaaattttaaacgaataaagaaagcccaatgggaaaagcaaa 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 565 caaacacattcaagaaaaaaaattg-aaacgaataaagaaagcccaatgggaaa-gcaaa 622
Query: 425 ggaccatactgttgatgtcgcagtattattccacagtgctcttcacctaacccacttcat 484
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggaccatactgtagatgttgcagtattattccacagtgctcttcacctaacccacttcat 682
Query: 485 tgcctcctagcttctgcgttac 506
|||||||| ||||||||||||
Sbjct: 683 -gcctcctaacttctgcgttac 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_p17.g1 MSMg01no407_p17.g1 CHROMAT_FILE:
MSMg01no407_p17.g1 PHD_FILE: MSMg01no407_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:48 2005
(528 letters)
>mm_chr7_120801474_120802402
Length = 929
Score = 924 bits (478), Expect = 0.0
Identities = 521/546 (95%), Gaps = 18/546 (3%)
Strand = Plus / Minus
Query: 1 tttatcagggatgggagagtacacggagctgactataaaataggcacgaggaacccagac 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttatcagggatgggacagtacacggagctgactataaaataggcacgaggaacccagac 628
Query: 61 agattcatgcccaccaaagcttgataccattcaactatggactaatcaattaccaccctt 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 627 agattcgtgcccaccaaagcttgataccattcaactatggactaatcaattagcaccctt 568
Query: 121 ccttaccacttaaaccagaccactctgattctgtggtatgcattgcttcttctgccttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccttaccacttaaaccagaccactctgattctgtggtatgcattgcttcttctgccttgt 508
Query: 181 gtttgggtgttcctttacttttgctgacctccatttttctctccctcctggaacagacaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 gtttgggtgttcctttacttttgctgacctccatttttctctccctcctggaacagtcaa 448
Query: 241 ggatgctgatgctaggagaaca-taactgaacttcacccttggatatctcagtcatggtt 299
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct: 447 ggatgctgatgctaggagaacactaactgagcttcacccttggatctctcagtcatggtt 388
Query: 300 tgggatttgctgtggaacctaccgagttccacttcatccagcctttacgtttgatggcga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgggatttgctgtggaacctaccgagttccacttcatccagcctttacgtttgatggcga 328
Query: 360 tgcttgcttggtagagatgttagggaaagaagtctagcattgcctgacagcccgccttgg 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgcttgcttggtagagacgttagggaaagaagtctagcattgcctgacagcccgccttgg 268
Query: 420 cacataaccggtgttcagaagctttggcaccctactctatccatccacatccttcagggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacataaccggtgttcagaagctttggcaccctactctatccatccacatccttcagggg 208
Query: 480 cctctca-----------------ttgccctggatccacacagactacacgcttcctttc 522
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 cctctcagtaacctgaggtcattgttgccctggatccacacagactacacgcttcctttc 148
Query: 523 cactct 528
||||||
Sbjct: 147 cactct 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
