BAC Information

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BAC

Clone NameMSMg01-408G03
Chromosome7 (Build37)
Map Location 61,999,136 - 61,999,301
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789, Mrps33p, LOC622146
Downstream geneLuzp2, LOC668796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408G03.T7 (MSMg01no408_g03.b1)MSMg01-408G03.TJ (MSMg01no408_g03.g1)
ACCAG506114AG506115
length7901,392
length of high quality
(start - end)
166 (142 - 307)---
definitionCHROMAT_FILE: MSMg01no408_g03.b1 PHD_FILE: MSMg01no408_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:21 2005CHROMAT_FILE: MSMg01no408_g03.g1 PHD_FILE: MSMg01no408_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTATTTGTGTGCGGTATACGACTCACTATTTCACAGAGGAGCGGCGGA
ATTCTCACATTTCACGCACATTAATATTTTCCTTGCTAAGATACCCATTC
TCCCATAAGATTAAGTAAAAACTTAATTCCTCAGTATTAAAGACTTTTCA
GGGTATTATTTAAAAATAAAACCCACAAAATACTACTTATATATCAAATA
TGCTTCATTCTTTTTTTATTCCCTATGAGTCCCTACCTCAAAACACATGA
TTTTATTTTTCTAAATTATGATTTGTTATGAATAATTAATGAAACAATCT
CTAGACTTAGAGATGAGATTTTTAGTTTCTGAGTACTCAGCTCCGAAATC
AGTTTAATCTTAGGCATTCATCTAAATTTTTTGAGTTTCCCCTACTGGAA
AATGATGCACCCGATCGCCAACACAAGGGTGAACCGGTTCCTTCTATTCT
TTACTGCTCTGATCTCATCAACTGTATCTTCGTTTTACTTACTATCCTAA
GATAATTGCGTCATATCTTATCTATCTTCCCGTGTCATGCTGTGTTCATT
GTCCCCCTTGCACTTACACTTGTTTTTTTATCGTTCTTTTCTTTCTATAT
CTTTGATTAGTTTGCTCTCTAAGTCATTTTTTCTCCGCGTACTTGGTTGT
GCAGCAATATTTTTTTGTTCTTTCTTATTTCTCGTTCCTGGTTCTCCTTT
AATTAATCTCCCGCCCTATTTATATCTCCTCATGCGTCTTATTTAATTTG
ACATCGCTTGGTCTCGCTTATCTTACCCATTATATGCCGT
GATTGAATTGCGCGGAATCGGCTGNNGCGNNCGCCCTGGGATACGAAGAC
AGAGGGAGGGNNGAGCACCANAANGAATGGGTGCCCAGCAGAGAAGGGCA
NGGAGAAAGACCCCACAGANGGAGNAGGTAAGATGGTAGAAACTGGTCCT
TTGTTAGAATACGGCATGCACCCACTCAGTANGCATAATTATCGACCCGC
AACACATGCCGCACGTCCATAATCGCGCAACTTCTCGTAGAGTTCGCCGA
CGAGGTGGTTCAAGCACCTTCGCAATAGCAGCCAATAGACGATTCCGGTA
CTACTTCCTCGCGCATAGCGCGTTTATAAGTTCTCTTATCTTAGACGTGT
TACGCGCCTTTATGAACACGGCGAANAATACATCTCTTTGCTTCAGGCTT
GAAACGGAGGCGCTAGAGCACTGACGCACATACGATGAATTCTATTGCGA
CTCTGTATTTCACGACATTTTCATCGCTCACGGCTCATATGAGTCACACA
CCGCGTCATCATTTATTATACCGATACAGTTATACCCATGATCAGCACGA
TTAAGCACCTCAACAGATATAGTAATGGTCATAATTTATGTCTGTATTAT
CTCCGCCATACATGTTCTCTTTACACGACACAGTCTAACTGCTTTTAATA
ANATATGATCCATATAGAGTGTGACGCATAAGTGTTATGTCGAAGATGAC
AACACACAACCTATTTAATAGAGCACCATATTCTCGTTACCTACAACGCT
TATGCGCGATCACATACAAATGATCGCCATATCATGCCACGCTAAGTACG
CTTTGACGCACGCACGCACTAGTTCTCACCCGCGTCGTTTCAACCACTCC
ACCGTTATTTAGCCGTTCTATCCCATTATTCATACGAGCCTATATGCAGG
CAGCCGGCTGCTATACACTCGCCATCTAANACTATGTCAGACCGCGATCT
ATGCTGAGCTACACCTTCAAACGTTCTTGTTTTGTTCAGCGCACTGCACT
CTCACTATACANACGCGACTATTTAATATCATCACGCACTCTATCCGCCG
TCCGCCGAATATACGCGCCACGACAGTGTTATACTACAGAATATGTCGAT
AGTGCTACGCACTAAACATATTACGACTGATGTTATCTGCGATTCTANGC
GGCATTACGCTACATAATACAGTGCGACGAGTCCCGCGATACNACTCTAA
TACGACACACTGACTGACTGCTAGACATAGTCATCGCACGTATGCGCAGT
GACTACACACATATGATAGTAACTGNCGACGCTCGCGTAGCATGCGTCGA
ATGAGTGATANGTCTACTCATCACATCTCATCCCCGCGTCATCCATNGAC
AGCGCGCTGTCGACATCACCTCTNATACCTGCAGTACACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_g03.b1 MSMg01no408_g03.b1 CHROMAT_FILE:
MSMg01no408_g03.b1 PHD_FILE: MSMg01no408_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:21 2005
         (166 letters)



>mm_chr7_61998936_61999501
          Length = 566

 Score =  306 bits (158), Expect = 6e-88
 Identities = 164/166 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacttttcagggtattatttaaaaataaaacccacaaaatactacttatatatcaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gacttttcagggtattatttaaaaataaaacccacaaaatactacttatatatcaaatat 307

                                                                       
Query: 61  gcttcattctttttttattccctatgagtccctacctcaaaacacatgattttatttttc 120
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 306 gcttcattctttttttattccctatgagttcctacctcaaaacacatggttttatttttc 247

                                                         
Query: 121 taaattatgatttgttatgaataattaatgaaacaatctctagact 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taaattatgatttgttatgaataattaatgaaacaatctctagact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)