BAC Information

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BAC

Clone NameMSMg01-409K22
Chromosome7 (Build37)
Map Location 28,602,043 - 28,602,375
singlet/doubletsinglet
Overlap gene4933426I21Rik
Upstream geneCyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233
Downstream geneZfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409K22.T7 (MSMg01no409_k22.b1)MSMg01-409K22.TJ (MSMg01no409_k22.g1)
ACCAG507109AG507110
length806740
length of high quality
(start - end)		348 (52 - 399)430 (56 - 485)
definitionCHROMAT_FILE: MSMg01no409_k22.b1 PHD_FILE: MSMg01no409_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:08 2005CHROMAT_FILE: MSMg01no409_k22.g1 PHD_FILE: MSMg01no409_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAGTCCACTCCAGTTTTCTTATAGCATGACAGATGTTA
TGTGTTTGTGTGGTATAGGTTTTTTTCCTCATGAGTTAGTTCAAAAACTA
TTATGAAACGGTTTGCATTAGGGTAAAGTGGCAAGATTTGGGTAAATTTG
GCAGCCCTGTGCCAAGGTTTGTCGGTTAAAAAAAATGACACGACACAACT
GATCTAGTGTTAAGAGATTCATTGGGGGGTTGGGGAGAGTGAAAGGCTGT
CTCACACTGGGGACATGGAGTCAGAGAGAGAGAGAGAGAGCAGGAAAGAG
AATATGAACAAGATAGGAAGGGAGGGAGGGAGGGAGGAGAGAGAGGTTNT
TNTTTTTTTNTTTTTTTTTNTTTTNNNTTTTTTGTTTTTTTTTTTNTTTT
TTTTTTTTTTTNTNTTTTTTTTTTTTTTNTTTTTTTTGTTTTTNTTTTTT
TTTTTTTTTTTTTTTTTGTTTTTTTTTTTGTTTTNTTTTTTGGTGGTTTT
TTTTGGTGTTTTGTNGTGTGTTTGTTTTTGNTTGTTGTTGTTTGTGTGTG
TTTTTGGTGGTTTTTTTTGTGGTGTGGTTTTTGTGTGNTTTTGTTTGTTT
TTTTGTTGGTTTTTTTTTTTGTTTGTTTGTTGTTTGTTTTTTTTTNGTTT
TTGTGNTTTTTTTGTTGTTTGGTGGTGTTGGGTGGGTGTTGTTTTGTGGT
TGTTTGTTGTTTGTTTGTTTTTTTTGTATTGTTTNTTTTATATTATTGAT
ATTTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGGCAGTTATACCACCACAGAGCCACACTGCCAGAAATGGAGAG
CACACCTGTGGTCTGTATCTCAGAGCAGGAAGGGTACATGCCTTTGATCC
GGATCTTTAGGCTGGAAGACACATGCTTTTGATCCAGATCAACGCATGCC
TTTAACTAGATCTTGAGGTATAACGGCCATGCATATTTATGTAATGAAAA
GGAGTTAAAGACTTAGGTCCAGGGGTAGTGGTGCCTAACTTTAATCCCAG
CACTTAGGAGACAGAGGCATGCAAATCTCTGAGTTCAAGGCCAGCCAGGT
CTACAGAGCACATTCCAGAACAGCCAAACTGAGGCAGTGAAGGAAGTCAC
TGAAAAGAGAAAGCTGGTAAAGAGGTAATTGAACAAGGGAGCCATGTTCC
AGCCCCAGCAAGCAGCAGAACTTGGCAACTTTGGCCATGTGGTTCTGTCT
TGAGAATCAAGGATGGAATTTCCCTTTGTGACTAAGAAAACCCTCTGACC
CCATGAAATGATTGGGTGTCCCTGCATGGAGGCCCAAAAAGGAGCTTGTG
AAGCAGCCAAGGTGGCCCTTGTGCTGGGAGTGGACTTGATAATGTGAGAA
TCCCCCCGGGGGACTAATTTTATAAATGATGAAAAGGCCCGGAAAATACT
AGGTTTGCCCTGTGAAGGATAAAAAGTCTCAGTCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_k22.b1 MSMg01no409_k22.b1 CHROMAT_FILE:
MSMg01no409_k22.b1 PHD_FILE: MSMg01no409_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:08 2005
         (348 letters)



>mm_chr7_28601839_28602582
          Length = 744

 Score =  563 bits (291), Expect = e-165
 Identities = 326/341 (95%), Gaps = 8/341 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtccactccagttttcttatagcatgacagatgttatgtgtttgtgtggta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtccacgccagttttcttatagcatgacagatgttatgtgtttgtgtggta 264

                                                                       
Query: 65  taggtttttttcctcatgagttagttcaaaaactattatgaaacggtttgcattagggta 124
           ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||
Sbjct: 265 taggtttttttcctcatgatttagttaaaaaactgttatgaaacggtttgcattagggta 324

                                                                       
Query: 125 aagtggcaagatttgggtaaatttggcagccctgtgccaaggtttgtcggttaaaaaaaa 184
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  
Sbjct: 325 atgtggcaagatttgggtaaatttggcagccctgtgccaaggtttgacggttaaaaaa-- 382

                                                                       
Query: 185 tgacacgacacaactgatctagtgttaagagattcattggggggttggggagagtgaaag 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 tgacacgacacaactgatctagtgttaagatattcattggggggttggggagagtgaaag 442

                                                                       
Query: 245 gctgtctcacactggggacatggagtcagagagagagagagagagcaggaaagagaatat 304
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 443 gctgtctcacactggggacatggagtcagagagagagagagag--caggaaagagaatat 500

                                                    
Query: 305 gaacaagataggaagggagggagggagggaggagagagagg 345
           ||||||||||||||||||||||||||||    |||||||||
Sbjct: 501 gaacaagataggaagggagggagggagg----agagagagg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 744
Length adjustment: 9
Effective length of query: 339
Effective length of database: 735
Effective search space:   249165
Effective search space used:   249165
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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