Query= MSMg01no410_f01.b1 MSMg01no410_f01.b1 CHROMAT_FILE:
MSMg01no410_f01.b1 PHD_FILE: MSMg01no410_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:01 2005
(547 letters)
>mm_chr7_72509312_72510259
Length = 948
Score = 818 bits (423), Expect = 0.0
Identities = 429/431 (99%), Gaps = 1/431 (0%)
Strand = Plus / Minus
Query: 118 ggctatacagagaaaccctgtcttgaaaacaaaacaaaacaaaaacaaaaacaccccaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ggctatacagagaaaccctgtcttgaaaacaaaacaaaacaaaaacaaaaacaccccaaa 889
Query: 178 atagagtaaattcctaagataaaaatttccattttcagcaaggaggcagaggcatgcaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 atagagtaaattcctaagataaaaatttccattttcagcaaggaggcagaggcatgcaga 829
Query: 238 tctttgtgagtttgaggccagcctggtctacagagtcagttcaggacaaccaaggctaca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tctttgtgagtttgaggccagcctggtctacagagtcagttcaggacaaccaaggctaca 769
Query: 298 cagagatcatgtctcagaaattaaaaaattcattttctccttggttattttaggcatttt 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 768 cagagatcatgtctcagaaattaaaaaattcattttcttcttggttattttaggcatttt 709
Query: 358 tactgttttgatattggtgttagtgttaaaaaaa-gtttttgttatgagtattgttttga 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 708 tactgttttgatattggtgttagtgttaaaaaaaagtttttgttatgagtattgttttga 649
Query: 417 gatgaggtctcataaaactaagaatgaccccagactatctggttcttcttttgtctcccc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gatgaggtctcataaaactaagaatgaccccagactatctggttcttcttttgtctcccc 589
Query: 477 tccacactgctcagtactgctgttactagtttaagctactaccatcatctttcgatttca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tccacactgctcagtactgctgttactagtttaagctactaccatcatctttcgatttca 529
Query: 537 gttctgaaatt 547
|||||||||||
Sbjct: 528 gttctgaaatt 518
Score = 157 bits (81), Expect = 2e-42
Identities = 139/175 (79%), Gaps = 28/175 (16%)
Strand = Plus / Minus
Query: 24 gtggcgcgcacctttaatcccagcgctcgggaggcaggca----------gatttctgag 73
||||||| |||||||| ||||||| |||||||||||||| ||||||||||
Sbjct: 318 gtggcgcacacctttagtcccagcattcgggaggcaggcagaggcaggcggatttctgag 259
Query: 74 ttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaac 133
|| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttgaagccagtctggtgtacaaagtgagttccaggacagccagggctatacagagaaac 199
Query: 134 cctgtcttgaaaa-----------------caaaacaaaacaaaaacaaaaacac 171
||||||||||||| ||||||||||| |||||||||||||
Sbjct: 198 cctgtcttgaaaaaaatcaaccccccctcccaaaacaaaac-aaaacaaaaacac 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space: 503706
Effective search space used: 503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_f01.g1 MSMg01no410_f01.g1 CHROMAT_FILE:
MSMg01no410_f01.g1 PHD_FILE: MSMg01no410_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:01 2005
(492 letters)
>mm_chr13_108204054_108204946
Length = 893
Score = 569 bits (294), Expect = e-166
Identities = 449/506 (88%), Gaps = 16/506 (3%)
Strand = Plus / Plus
Query: 1 ttcacatttcctggcttctgaaaaatttgcttccacaaatcttttacaacgatgtaccct 60
|||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||
Sbjct: 190 ttcacatttcctggcttctgaaaattttgcttccacaaatcttctataactatgtaccct 249
Query: 61 cataatgcccagtcatataatttctctccaatcatctgggcaaaggtgatggcttgttgt 120
| |||| ||||||||||||| ||||| ||| | |||||||||| ||||||||||||||||
Sbjct: 250 cgtaatccccagtcatataacttctccccagtgatctgggcaatggtgatggcttgttgt 309
Query: 121 gggtcataga-tg-ggcaccaaatctcatgaaaaaaggaggatacaccagcttctttatt 178
|||| ||||| | |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 310 gggtaatagacagaggcacctaatcccatgaaaaaaggaggatacaccagcttctttatt 369
Query: 179 tttgagcctctagcaaaaaggagtccaacaaaacca---------ataacaccaagtctt 229
||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 370 tttgaacctctagcaaaaaggagtccaacaaaaccagcaaaaccaataacaccgagtctt 429
Query: 230 gggaaaaatcaaggagacacactttgaagatagttatagttgtctactccccaatggaca 289
|||||||||| ||||| | || ||||||||||||||||||||||||||||||| ||||||
Sbjct: 430 gggaaaaatccaggaggcgcattttgaagatagttatagttgtctactccccactggaca 489
Query: 290 aagt-attctatcttgggtataatatgggagtatatttcctgacacaaacttgtatatgg 348
|||| || | | ||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct: 490 aagtgatcc-accttgggtttagtatgggagtatatttcctgacagaaacttgtatatgg 548
Query: 349 ctcccaatgatgtcggagttgtgagatgtttccttca-gttgggtacttggctcttccac 407
||| ||||||||||||||||||||||||||| ||||| |||| || |||||||| |||||
Sbjct: 549 ctcacaatgatgtcggagttgtgagatgttttcttcaagttgagtccttggctcctccac 608
Query: 408 atatttag-tctggccctcaggaactgaacagagtgaaagcttattaatcttcatgtagc 466
|||||||| | || |||||||||||||| |||||||||||| || ||||||||||| |
Sbjct: 609 atatttagat-tgaccctcaggaactgagtagagtgaaagctcatcgatcttcatgtaac 667
Query: 467 ttttgttaggcgagtccattttgggt 492
|||||| |||||||||| ||||||||
Sbjct: 668 ttttgtgaggcgagtcctttttgggt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
