BAC Information

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BAC

Clone NameMSMg01-410L04
Chromosome7 (Build37)
Map Location 109,010,262 - 109,010,686
singlet/doubletsinglet
Overlap geneFolr2, Folr1
Upstream geneTnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1
Downstream gene3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410L04.T7 (MSMg01no410_l04.b1)MSMg01-410L04.TJ (MSMg01no410_l04.g1)
ACCAG507886AG507887
length751756
length of high quality
(start - end)
457 (51 - 507)---
definitionCHROMAT_FILE: MSMg01no410_l04.b1 PHD_FILE: MSMg01no410_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:30 2005CHROMAT_FILE: MSMg01no410_l04.g1 PHD_FILE: MSMg01no410_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATATGTTCCACAATGTATTTCCATCATGTGTAGCTCAGG
CACACCCACCCTTTGGGTTCTACTTTGTCTTTTCCTCCCACAGGAGCATG
GTCAGCCTATTTGAACCACACTTGACTCTTCCCTGGGAATCACAAACTAT
CAATAGATCCTCAGCTAGGGATGAGGTTCCTGTGTCCTTCTCTAACCCAC
TGCTGCTGCTAATTTGTTCGTTTGTTTGTGTCTGGGAGACAGGGTCTCTC
TTGTAGCCTGTCTGGCCTGGAACTCTTACAGGCTGGCCTCCCGGGATAAA
GGATTAAAGGTGTGTGCCTCCATACCTGTGCTGCTGTTTTGAAACACTGA
GCACAAGGTTGCTAGTTTTAGATTGAGCAGTGGCTACCTTGAGCATCCTT
AATTTACAAACTTATTCAAACCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTTCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCC
CCCTCTTTTTAAATCTATCCCTGTCCCTCGTCAGTCCCACGCATTCGAAA
TCCCTGATCCCCCATAGTTTATCTTGGCTCCTATACCCTGTCCCCATTAC
ATCATATCTTTTCTGCCGTGACCCGTTTCCCTACATTAACCGCCCCCCTT
GGTGCCTTACTCTCTTTATTCCCACCATTCTCTTATTCACATCCTTCCCC
T
ACTTAGACTAAATAAAATTACGAAGAACGCTGTCTCGTCCTGTACCTTCC
TATTTCCAACCCCCATAAAACCAACGACTTACGCGTCCGTTCTCTTTTCT
CCTCNNNNTTGGGNGGCCCCCCACAAAATNTNNNTGCCAAAATGGAATAA
AAGGGGGGGGGNTTTAAAGGTCTCTGGGGGCGGGGGGCCCGGCCCCTGTG
GGGTCTTTCTTCCCGCNAAACATTTTTAGGGNTGGAACAACCTAATTAGN
AAAAGGTTATTCCCCCGGGGNAAAATTTCCCAAGGGCCCCCCAAAACCCC
CTGGAAAGCCTTAACACATTAAGGCCCTTGGAAAAAAAAAAGGGGCTTTA
ATTCCCTCCCCCCAAAAAACCCAAAAAACCCAAAAACCCCAAAAACCCCC
AACCACGGGTTAAGGCCCAAAAAAGGGGGGGGGAAAAAAANTGGGGGTTT
TCCAATTCCCCAAAAAGGGGGGGGGCCTTTTTTCTTGGAGAGGGGTTGGT
GGGGAAAAAAAACCCCCCACCCCGTGGGAGAAAGGGGGGGAACCTCTCCC
CCNANAAAACCCCCCCCCCCCAAAAAAAAAAAAACCCCCCACCCCAATGG
GGGGGGNCTTTTCTTTTTTTGGGGGGGCCGCCCCCCACACCNNNAAAAAA
AGAGACAAAAAAAATAATTCNTGTCCCCCCCCCAAAAAAAAAAAAAAAAT
TAATACNNNCTTTCGNCCCCCGCGGGCGGGAGAGGAGGGGGNANAAACAA
GGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_l04.b1 MSMg01no410_l04.b1 CHROMAT_FILE:
MSMg01no410_l04.b1 PHD_FILE: MSMg01no410_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:30 2005
         (457 letters)



>mm_chr7_109010262_109011119
          Length = 858

 Score =  775 bits (401), Expect = 0.0
 Identities = 419/427 (98%), Gaps = 5/427 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatatgt---tccacaatgtatttccatcatgtgtagctcaggcacacccaccc 61
           |||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattccatatgtacat--acaatgtatttccatcatgtgtagctcaggcacacccaccc 368

                                                                       
Query: 62  tttgggttctactttgtcttttcctcccacaggagcatggtcagcctatttgaaccacac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 367 tttgggttctactttgtcttttcctcccacaggagcatggtcagcctatttgaaccacat 308

                                                                       
Query: 122 ttgactcttccctgggaatcacaaactatcaatagatcctcagctagggatgaggttcct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgactcttccctgggaatcacaaactatcaatagatcctcagctagggatgaggttcct 248

                                                                       
Query: 182 gtgtccttctctaacccactgctgctgctaatttgttcgtttgtttgtgtctgggagaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtgtccttctctaacccactgctgctgctaatttgttcgtttgtttgtgtctgggagaca 188

                                                                       
Query: 242 gggtctctcttgtagcctgtctggcctggaactcttacaggctggcctcccgggataaag 301
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 187 gggtctctcttgtagcctgtctggcctggaactcaaacaggctggcctcccgggataaag 128

                                                                       
Query: 302 gattaaaggtgtgtgcctccatacctgtgctgctgttttgaaacactgagcacaaggttg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gattaaaggtgtgtgcctccatacctgtgctgctgttttgaaacactgagcacaaggttg 68

                                                                       
Query: 362 ctagttttagattgagcagtggctaccttgagcatccttaatttacaaacttattcaaac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ctagttttagattgagcagtggctaccttgagcatccttaatttacaaacttattcaaac 8

                  
Query: 422 cttcctt 428
           |||||||
Sbjct: 7   cttcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space:   379056
Effective search space used:   379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)