BAC Information

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BAC

Clone NameMSMg01-410L10
Chromosome7 (Build37)
Map Location 60,273,053 - 60,273,296
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668783, EG620782, LOC100040692
Downstream geneGm1865, LOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410L10.T7 (MSMg01no410_l10.b1)MSMg01-410L10.TJ (MSMg01no410_l10.g1)
ACCAG507898AG507899
length749762
length of high quality
(start - end)
244 (75 - 318)501 (81 - 581)
definitionCHROMAT_FILE: MSMg01no410_l10.b1 PHD_FILE: MSMg01no410_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:32 2005CHROMAT_FILE: MSMg01no410_l10.g1 PHD_FILE: MSMg01no410_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCGAGAAATCCGC
GGAATTCCATAATCTGCCGCATAAATGAGTGTGAAAGACAGGGAAGGGAA
CTGGGAGGAAATACATGCCTATTAGCAGGGTGAGTGAGACACACAGCTTA
ACATTATGCAGCGCTATTTGGAACCAGACAGAGTGTTGGCTAGCATGAAA
CATAAACACACATGTATATAGCAGAGGCTCTGACTATAGATGTGTCTTTG
GTGTACAATACAACACTGAGGTTCATGTTGATAGACAATCATGAACCAGA
GGGAGCCAAACTGTTCAATTNGTTTTCCTCCAGAACTCTGTTTCCCCTCT
TAGCTTATTGTTAGCCAGACTTTAAGGCTCTGAATACCTTTCACTGTGTC
ACACATCACTGAATGTGATCATCCCTTTATGCCCTGATATGACGCCATTA
GTGTTTGATCCTACCTAGAAAATGGATCTGAATAGCTCCTAGTACCACAA
GTCTTCACATTTCTGTCACAGATGTCTCTGAGAGTGAAGCCATTTCTGAT
CCATTAGCTGTGGATAAAGCATGACTCTAATACCCTCCTAGTTGTGTACA
TCCAGACTGCAAAGCTATTTTCTCTGTGCGCTCCGCCTGCGGATCCTATC
TGTTCTGCCCTCCCATGCTACCTATATCGTATCTCACGGGGCCTTCCTGT
ACCAATCTCAAGTTCTGTGCCCCCCTACTCTTGCCAACTCTTTTCCCCN
NNNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACATTTTTCCACTTTTA
TTATATTTTCTTCATTTACATTTCAAATGCTATCTCAAAAGTCCCCTATA
CTCTCCCTCTGCCCTGCTCCCCTACCCATCCACTTCTACTTCTTGGCCCT
GGCATTCCCTTGTATTGGGGGAATTCATAACTTTTATTAGTAATTATTGA
ACCCTTTATAATAAGGACTGCCATTAGAGCCCTCTGTAATATGAAAACTG
CAGTTAAGACTCAGCAAGCCTTCTCATGTCACAAGCTATTTGCACTAACA
CAGAAAGCAGACATATTTACAAAAGAAATACATTCCTAAGGCAGTAAAAC
TGCTACTTAAAGGTCATAAATTGGAAATGAACAGTTTATTGTAGGTGCAA
GGACAGAAAATAAATTATTGACTAGGTTTATCTATACAAAATGTCAATAC
TAGTGAGACACAAGTCAGATGAATTGCCATATCAGCTTAACTTAGATTTA
AGGATTATAGTTTTATACTCCCAATGAACCTGTGGAGGTAGTGGCAGATA
ATAAATGTTTAGTTTGATAACTAGCCTTAATGGAAACACTTGTAAACCAC
CTATTTGGTACCTCCTCACCCACTTATGAATTGAAATTATATTTGGACAT
TTTGTAACCCCCCTGAAAAACAACACAGAGGTTTAAAAAACCCCATTGGA
ACCCTGGTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_l10.b1 MSMg01no410_l10.b1 CHROMAT_FILE:
MSMg01no410_l10.b1 PHD_FILE: MSMg01no410_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:32 2005
         (244 letters)



>mm_chr7_60272853_60273496
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtgtgaaagacagggaagggaactgggaggaaatacatgcctattagcagggtgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atgagtgtgaaagacagggaagggaactgggaggaaatacatgcctattatcagggtgag 260

                                                                       
Query: 61  tgagacacacagcttaacattatgcagcgctatttggaaccagacagagtgttggctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagacacacagcttaacattatgcagcgctatttggaaccagacagagtgttggctagc 320

                                                                       
Query: 121 atgaaacataaacacacatgtatatagcagaggctctgactatagatgtgtctttggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 atgaaacataaacacacatgtatatagcagaggctctgactatagatgtgtctttggtgg 380

                                                                       
Query: 181 acaatacaacactgaggttcatgttgatagacaatcatgaaccagagggagccaaactgt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 acaatacaacactgaggttcatgttgatagacagtcatgaaccagagggagccaaactgt 440

               
Query: 241 tcaa 244
           ||||
Sbjct: 441 tcaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)