BAC Information

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BAC

Clone NameMSMg01-410M03
Chromosome7 (Build37)
Map Location 103,335,286 - 103,519,430
singlet/doubletdoublet
Overlap geneEG666836, Odz4, LOC670727
Upstream geneLOC666823, Frda-ps
Downstream geneLOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410M03.T7 (MSMg01no410_m03.b1)MSMg01-410M03.TJ (MSMg01no410_m03.g1)
ACCAG507932AG507933
length742734
length of high quality
(start - end)
244 (78 - 321)574 (83 - 656)
definitionCHROMAT_FILE: MSMg01no410_m03.b1 PHD_FILE: MSMg01no410_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:35 2005CHROMAT_FILE: MSMg01no410_m03.g1 PHD_FILE: MSMg01no410_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,335,286 - 103,335,521)(103,518,857 - 103,519,430)
sequence
AAGGAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCTAGAAGTTTCATCAAGTGGCCAAAGCAAGATAAAGATGCC
AGAGAGTAAGTATTTCATATTTTTAGGTCATAGGCTATAGGTAGCAACTG
ACAGAGTGACCCCTGTGTGGGAGGGTCTTTTGCACATTTCTATGTAGGGA
ACACAGCATAGTCTTGCTGAGCACTACAGGGAAACAGTTCCATGCTTTGA
GAGATTTGTTTTAATTATTACAGTGCACGTGCACACGTTCGCTTGACATA
GCACATGTGTGGATGCTGGTTTAATAATACAACTTGTGGAAGTTGGTTCT
TTCTGTCTGCCACGTGTGGTCCAGGCATTAAACTTAGGTCACCAGCCTTG
ACAACAAGCCTCTTTATCCACTGAACCATCTCTCCAGCCCTATACCCGGA
GGTCTTGTATGCTCCAGCATACCTGCTTAGAATGCCAGAGGGTTGTATTC
AGAGAAGGCACTAGAATCAGTGTGCACAGTGAATGATGAAGATACGCTTG
GCTCAGCAAGTAGTGAAAAATCTGCCCTCTGAACAGTGGTAAGACAGTGG
TAGAATCATGCCATGCATTTCCCATCATGGCTTCACTGAATTCATCCGTG
TTCTTTTTTTTTTCCCTGCCCTCCCGGAAGTATCCCGTGGCACTCTCCTG
TTTCCTCCATGCCCTCTCCTTCCGTCCTCATTTTTATTCTGT
NNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGACAGACTCAGATCG
TATACACCTTGTTCTGCTTAGACTTCAGCTATGTAGCATAGGATGTCTGG
GAAAACTCCTATGTATCCTTCAGGACTCCATGTGGAACGGGTTTCTCTGG
ACACTGTTCGGTTCTGAAGTCTCTCTGCTTATATGTCTATGGTCTCTCAT
CATGACTAGGTGGCAACCTTGTCCATGCCTGGGATCTATTATTTATATAA
AGTGCTATACCTCACCACATCAGACCAGTTGCTCCTCTGGAACAGGGACT
CAAATAGAATCCGTTCAGACACTCTGGTAGAGGGACTGGCACAGGAAAAG
AGCTTGATGAATAATTGCTGCATTAACTAATGAAGAGACTGATTGAATGA
GTGAGCCAAAGGCCACATTTCTGAGCCTCTGCGTTACAAATGTTTGGGAT
TGATATAATCACCTGTATTATAGTGAAATTGCTGCACTTATGAACATAAT
CTAAGATGTCTATTTTCTGCAACAAGCCATTCAAGACAAGAATATTCCTT
TCTTTATTTCACATGTTAAACAGTAACAAAAACCACACCCGGATCTTTGG
TCAACCCTTAAACACTAAGCTATTAATACGATGTTTTGATTTTCCTGGAT
GACCCTGATGGATTCATCCATGCATTGGNCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_m03.b1 MSMg01no410_m03.b1 CHROMAT_FILE:
MSMg01no410_m03.b1 PHD_FILE: MSMg01no410_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:35 2005
         (244 letters)



>mm_chr7_103335086_103335729
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccaaagcaagataaagatgccagagagtaagtatttcatatttttaggtcataggcta 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggccaaagcaaaataaagatgccagagagtaagtatttcatatttttaggtcataggcta 260

                                                                       
Query: 61  taggtagcaactgacagagtgacccctgtgtgggagggtcttttgcacatttctatgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtagcaactgacagagtgacccctgtgtgggagggtcttttgcacatttctatgtag 320

                                                                       
Query: 121 ggaacacagcatagtcttgctgagcactacagggaaacagttccatgctttgagagattt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacacagcatagccttgctgagcactacagggaaacagttccatgctttgagagattt 380

                                                                   
Query: 181 gttttaattattacagtgcacgtgcacacgttcgcttgacatagcacatgtgtgga 236
           |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 381 gttttaatcattacagtgcacgtgcacgcgtgcgcttgacatagcacatgtgtgga 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no410_m03.g1 MSMg01no410_m03.g1 CHROMAT_FILE:
MSMg01no410_m03.g1 PHD_FILE: MSMg01no410_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:35 2005
         (574 letters)



>mm_chr7_103518657_103519630
          Length = 974

 Score = 1087 bits (562), Expect = 0.0
 Identities = 571/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggacagactcagatcgtatacaccttgttctgcttagacttcagctatgtagcatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 taggacagactcagatcgtatacaccttgttctgcttagacttcagctatgtagcatagg 715

                                                                       
Query: 61  atgtctgggaaaactcctatgtatccttcaggactccatgtggaacgggtttctctggac 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 714 atgtctgggaaaactcctatgtatccttcaggactccatgtggaatgggtttctctggac 655

                                                                       
Query: 121 actgttcggttctgaagtctctctgcttatatgtctatggtctctcatcatgactaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 actgttcggttctgaagtctctctgcttatatgtctatggtctctcatcatgactaggtg 595

                                                                       
Query: 181 gcaaccttgtccatgcctgggatctattatttatataaagtgctatacctcaccacatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcaaccttgtccatgcctgggatctattatttatataaagtgctatacctcaccacatca 535

                                                                       
Query: 241 gaccagttgctcctctggaacagggactcaaatagaatccgttcagacactctggtagag 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaccagctgctcctctggaacagggactcaaatagaatccgttcagacactctggtagag 475

                                                                       
Query: 301 ggactggcacaggaaaagagcttgatgaataattgctgcattaactaatgaagagactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggactggcacaggaaaagagcttgatgaataattgctgcattaactaatgaagagactga 415

                                                                       
Query: 361 ttgaatgagtgagccaaaggccacatttctgagcctctgcgttacaaatgtttgggattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgaatgagtgagccaaaggccacatttctgagcctctgcgttacaaatgtttgggattg 355

                                                                       
Query: 421 atataatcacctgtattatagtgaaattgctgcacttatgaacataatctaagatgtcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atataatcacctgtattatagtgaaattgctgcacttatgaacataatctaagatgtcta 295

                                                                       
Query: 481 ttttctgcaacaagccattcaagacaagaatattcctttctttatttcacatgttaaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttttctgcaacaagccattcaagacaagaatattcctttctttatttcacatgttaaaca 235

                                             
Query: 541 gtaacaaaaaccacacccggatctttggtcaacc 574
           ||||||||||||| ||||||||||||||||||||
Sbjct: 234 gtaacaaaaaccaaacccggatctttggtcaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)