BAC Information

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BAC

Clone NameMSMg01-411I05
Chromosome7 (Build37)
Map Location 4,908,345 - 4,908,856
singlet/doubletsinglet
Overlap geneGm1079
Upstream geneLOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049
Downstream geneGm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I05.T7 (MSMg01no411_i05.b1)MSMg01-411I05.TJ (MSMg01no411_i05.g1)
ACCAG508505AG508506
length750820
length of high quality
(start - end)
640 (49 - 688)512 (155 - 666)
definitionCHROMAT_FILE: MSMg01no411_i05.b1 PHD_FILE: MSMg01no411_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:35 2005CHROMAT_FILE: MSMg01no411_i05.g1 PHD_FILE: MSMg01no411_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATATTTCCTGATACCTTGGTCAAGGATGAAATAAAGAAA
GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCC
AAACATATGGGACACAATGAAGGCAGTCCTAAGAGGAAAACTCATAGCCC
TGAGTGCCTCCAAATAGAAACTAGAGAGAGCATACACTAGCAGCCTGACA
ACACATCTGAAAGCTCTAGAACAAAAGGAGGCAAATTAATCAAAGAGGAG
TAGAGGGCAGGAAATAATAAAACTCAGAGCTGAAATCAACCAAGTGGAAA
CAAAAAGAACTATTCAAATAATCAACCAAACCAGGAGCTGGTTCTTTGAG
AAAAACAAGAAGACAGATAAACCCTTAGCCAGACTAACTAGAGGGCACAG
GAACAGTATCCTAATTAACAAAATCAGAAATGAAAAACGAGACATAACAA
CAGAACCTGAGAAAATCCAAAACATCAACAGCTCCTACTACAAAAGACTA
TACTCAACAAAATAGGAAAACCTGGATGAAATGGACAGTTTACTAGACAG
ATACCAGGTATCAAAGTTAAATCAGGATCAGATTAACAATCTAAACAGTC
CCATTTTCCCTAAGGATATAGAAGCAGTCATCAATAGTCTCTCAACCAAA
AAAAGCCCAGGAACAGATGGGTTTAGTACAGAGTTCTATCAGACCTTCAN

GGGGATGATGGGGAGGGNAGGNAGAGAGNNNNNAGNAGAGGNAGGNNAGG
GGGAGGAGNGNNNNNNGGGGCGGGGAGTAGACGATGATAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATGGCTGGGCTCCAAGGTGGAAGGAGAGGACTGACTGCTAAAAGT
CCTCTGATTTACACACAGCACTTTACACACACACCCCATATACACACATA
TATGTGCATACACAGGTATGTGTATATACACGCATATGTGCGTGTACACA
CACATACACACAAATGCATGCACACATACACACATACAAACACATACATG
CATGCACACAAGCACACGTGCACACATTCGTGAATACACACAGCATAAAG
GAGGGGCACAGATAACACACAGGACAGATGAGAGATAGATAGAGCGAAAA
CCAAGAAGAGGCCACAGCCAGGCAGCTCAGGCTAAGCAGGTCTCAGCATG
CAGGTTGCTCCCCCTTTGCAGCCTCCTGCCCTCCTCTCCACCCATCTTCT
CTCAGCTCCTTTGCCAATTCCTCAGCCTCCCCTTCCCTCTGCTTCCAGGG
TTGGCCTAGATAGCTCTTGATGGAGCCCACAGGGTTCCTCTTCCGGGGGT
GAGGATCTAGCAGCCCCCATAGGAGAGTGTCTGCTGTAGGTGACAGGCTA
TACTACGGCTGTGCCCGGCCTTGGCTCTGACCACAAGCCTGCCAGACGAT
AAAGTCCTCATAGAAAGGGGCAACCTCCATCAGGGGCTGGCCCCACGGTA
CGTATCCCGTACGGAGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i05.g1 MSMg01no411_i05.g1 CHROMAT_FILE:
MSMg01no411_i05.g1 PHD_FILE: MSMg01no411_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:35 2005
         (512 letters)



>mm_chr7_4908145_4909056
          Length = 912

 Score =  975 bits (504), Expect = 0.0
 Identities = 510/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggctgggctccaaggtggaaggagaggactgactgctaaaagtcctctgatttacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggctgggctccaaggtggaaggagaggactgactgctaaaagtcctctgatttacac 260

                                                                       
Query: 61  acagcactttacacacacaccccatatacacacatatatgtgcatacacaggtatgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcactttacacacacaccccatatacacacatatatgtgcatacacaggtatgtgta 320

                                                                       
Query: 121 tatacacgcatatgtgcgtgtacacacacatacacacaaatgcatgcacacatacacaca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatacacgcatatgtgcatgtacacacacatacacacaaatgcatgcacacatacacaca 380

                                                                       
Query: 181 tacaaacacatacatgcatgcacacaagcacacgtgcacacattcgtgaatacacacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaaacacatacatgcatgcacacaagcacacgtgcacacattcgtgaatacacacagc 440

                                                                       
Query: 241 ataaaggaggggcacagataacacacaggacagatgagagatagatagagcgaaaaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaggaggggcacagataacacacaggacagatgagagatagatagagcgaaaaccaa 500

                                                                       
Query: 301 gaagaggccacagccaggcagctcaggctaagcaggtctcagcatgcaggttgctccccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagaggccacagccaggcagctcaggctaagcaggtctcagcatgcaggttgctccccc 560

                                                                       
Query: 361 tttgcagcctcctgccctcctctccacccatcttctctcagctcctttgccaattcctca 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tttgcagcctcctgccctcctctccacccatcttctctcagctccgttgccaattcctca 620

                                                                       
Query: 421 gcctccccttccctctgcttccagggttggcctagatagctcttgatggagcccacaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctccccttccctctgcttccagggttggcctagatagctcttgatggagcccacaggg 680

                                           
Query: 481 ttcctcttccgggggtgaggatctagcagccc 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctcttccgggggtgaggatctagcagccc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)