MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-412L08
Chromosome	7 (Build37)
Map Location	73,416,283 - 73,416,793
singlet/doublet	singlet
Overlap gene	Lrrk1
Upstream gene	Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1
Downstream gene	Aldh1a3, Asb7, Lins2, Lass3, Adamts17, Lysmd4, Mef2a
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tjp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21872 MGI:98759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1693 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381892 MGI:2686539
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG665234 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665234 MGI:3644883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	Tarsl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272396 MGI:2444486
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tm2d3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68634 MGI:1915884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC665241 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665241
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 123 ESTs, 17 Proteins pseudo : _no_value

name	Pcsk6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18553 MGI:102897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 70 ESTs, 35 Proteins

name	Snrpa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68981 MGI:1916231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	H47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109815 MGI:95994
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chsy1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269941 MGI:2681120
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233328 MGI:2142227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aldh1a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56847 MGI:1861722
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:117589 MGI:2152835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Lins2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72635 MGI:1919885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lass3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545975 MGI:2681008
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 10 Proteins

name	Adamts17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233332 MGI:3588195
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lysmd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75099 MGI:1922349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mef2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17258 MGI:99532
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tjp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678354 GeneID:21872 MGI:98759
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tight junction protein 1 transcript_id : NM_009386.1

name	Gm1693 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380543 GeneID:381892 MGI:2686539
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : gene model 1693, (NCBI) transcript_id : XM_358673.5

name	EG665234 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380545 GeneID:665234 MGI:3644883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : predicted gene, EG665234 transcript_id : XM_975528.1

name	Tarsl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26986636 GeneID:272396 MGI:2444486
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : threonyl-tRNA synthetase-like 2 transcript_id : NM_172310.1

name	Tm2d3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341817 GeneID:68634 MGI:1915884
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TM2 domain containing 3 transcript_id : NM_178056.2

name	Tm2d3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388656 GeneID:68634 MGI:1915884
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TM2 domain containing 3 transcript_id : NM_026795.2

name	Pcsk6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380525 GeneID:18553 MGI:102897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 68 ESTs, 31 Proteins product : proprotein convertase subtilisin/kexin type 6, transcript variant 1 transcript_id : XM_355911.4

name	Pcsk6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380526 GeneID:18553 MGI:102897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 69 ESTs, 28 Proteins product : proprotein convertase subtilisin/kexin type 6, transcript variant 2 transcript_id : XM_886136.2

name	Snrpa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981941 GeneID:68981 MGI:1916231
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nuclear ribonucleoprotein polypeptide A' transcript_id : NM_021336.3

name	H47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111119009 GeneID:109815 MGI:95994
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histocompatibility 47 transcript_id : NM_024439.3

name	Chsy1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487198 GeneID:269941 MGI:2681120
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate (chondroitin) synthase 1 transcript_id : NM_001081163.1

name	Lrrk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56699426 GeneID:233328 MGI:2142227
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine-rich repeat kinase 1 transcript_id : NM_146191.3

name	Aldh1a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542122 GeneID:56847 MGI:1861722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldehyde dehydrogenase family 1, subfamily A3 transcript_id : NM_053080.2

name	Asb7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17978255 GeneID:117589 MGI:2152835
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 7 transcript_id : NM_080443.1

name	Asb7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801909 GeneID:117589 MGI:2152835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 7 transcript_id : NM_178236.3

name	Lins2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22779908 GeneID:72635 MGI:1919885
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lines homolog 2 (Drosophila) transcript_id : NM_152815.1

name	Lass3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257505 GeneID:545975 MGI:2681008
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 10 Proteins product : longevity assurance homolog 3 (S. cerevisiae) transcript_id : XM_620510.3

name	Adamts17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378418 GeneID:233332 MGI:3588195
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADAM metallopeptidase with thrombospondin type 1 motif, 17 transcript_id : NM_001033877.2

name	Lysmd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384938 GeneID:75099 MGI:1922349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LysM, putative peptidoglycan-binding, domain containing 4 transcript_id : NM_175215.3

name	Mef2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253933 GeneID:17258 MGI:99532
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myocyte enhancer factor 2A transcript_id : NM_001033713.1

name	Tjp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678355 CCDS:CCDS21338.1 GeneID:21872 MGI:98759
definition	GO_component : GO:0005912 - adherens junction [Evidence IDA]; GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0046581 - intercellular canaliculus [Evidence IDA]; GO:0016020 - membrane [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0005923 - tight junction [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation product : tight junction protein 1 protein_id : NP_033412.1

name	Gm1693 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94380544 GeneID:381892 MGI:2686539
definition	codon_start : 1 product : hypothetical protein protein_id : XP_358673.5

name	EG665234 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94380546 GeneID:665234 MGI:3644883
definition	codon_start : 1 product : hypothetical protein protein_id : XP_980622.1

name	Tarsl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986637 CCDS:CCDS21339.1 GeneID:272396 MGI:2444486
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : threonyl-tRNA synthetase-like 2 protein_id : NP_758514.1

name	Tm2d3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017351 CCDS:CCDS21341.1 GeneID:68634 MGI:1915884
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; BBP-like protein 2 product : BBP-like protein 2 isoform 2 protein_id : NP_835157.1

name	Tm2d3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312084 CCDS:CCDS21340.1 GeneID:68634 MGI:1915884
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; BBP-like protein 2 product : BBP-like protein 2 isoform 1 protein_id : NP_081071.1

name	Pcsk6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51749605 GeneID:18553 MGI:102897
definition	codon_start : 1 product : paired basic amino acid cleaving system 4 isoform 1 protein_id : XP_355911.2

name	Pcsk6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82906218 GeneID:18553 MGI:102897
definition	codon_start : 1 product : paired basic amino acid cleaving system 4 isoform 2 protein_id : XP_891229.1

name	Snrpa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981942 CCDS:CCDS21342.1 GeneID:68981 MGI:1916231
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : U2 snRNP-A' product : U2 small nuclear ribonucleoprotein polypeptide A' protein_id : NP_067311.3

name	H47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111119010 GeneID:109815 MGI:95994
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008430 - selenium binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA] codon_start : 1 note : minor histocompatibility antigen H47; VCP-interacting membrane protein product : selenoprotein S protein_id : NP_077759.3 transl_except : (pos:73233730..73233732,aa:Sec)

name	Chsy1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487199 GeneID:269941 MGI:2681120
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0047238 - glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity [Evidence IEA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0050510 - N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0030206 - chondroitin sulfate biosynthesis [Evidence ISS] codon_start : 1 product : carbohydrate (chondroitin) synthase 1 protein_id : NP_001074632.1

name	Lrrk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56699427 CCDS:CCDS21344.1 GeneID:233328 MGI:2142227
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : leucine-rich repeat kinase 1 protein_id : NP_666303.3

name	Aldh1a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542123 CCDS:CCDS21345.1 GeneID:56847 MGI:1861722
definition	GO_function : GO:0004028 - 3-chloroallyl aldehyde dehydrogenase activity [Evidence TAS]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0048048 - embryonic eye morphogenesis [Evidence IMP] [Evidence IGI]; GO:0002072 - optic cup morphogenesis (sensu Mammalia) [Evidence IGI]; GO:0043065 - positive regulation of apoptosis [Evidence IMP] [Evidence IGI]; GO:0042573 - retinoic acid metabolism [Evidence IMP] [Evidence IGI] codon_start : 1 exception : mismatches in translation note : aldehyde dehydrogenase-6; retinaldehyde dehydrogenase 3 product : aldehyde dehydrogenase family 1, subfamily A3 protein_id : NP_444310.2

name	Asb7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17978256 CCDS:CCDS21346.1 GeneID:117589 MGI:2152835
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : ankyrin repeat and SOCS box-containing protein 7 isoform 1 protein_id : NP_536691.1

name	Asb7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30141906 GeneID:117589 MGI:2152835
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : ankyrin repeat and SOCS box-containing protein 7 isoform 2 protein_id : NP_839954.1

name	Lins2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779909 CCDS:CCDS21348.1 GeneID:72635 MGI:1919885
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : Wins2 protein with Drosophila Lin homologous domain; protein with Drosophila Lines homologous domain; protein with Drosophila Lines (Lin) homologous domain product : Wins2 protein protein_id : NP_690028.1

name	Lass3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82906357 GeneID:545975 MGI:2681008
definition	codon_start : 1 product : similar to longevity assurance 3-like protein protein_id : XP_620510.2

name	Adamts17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702169 CCDS:CCDS21349.1 GeneID:233332 MGI:3588195
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 note : disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17 product : ADAM metallopeptidase with thrombospondin type 1 motif, 17 protein_id : NP_001029049.1

name	Lysmd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424844 CCDS:CCDS21350.1 GeneID:75099 MGI:1922349
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : LysM, putative peptidoglycan-binding, domain containing 4 protein_id : NP_780424.1

name	Mef2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76253934 GeneID:17258 MGI:99532
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : myocyte enhancer factor 2A protein_id : NP_001028885.1

name	LOC665241 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257504 GeneID:665241
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 123 ESTs, 17 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A3 pseudo : _no_value transcript_id : XR_033783.1

clone name	MSMg01-457O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O01
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-412L08.T7 (MSMg01no412_l08.b1)	MSMg01-412L08.TJ (MSMg01no412_l08.g1)
ACC	AG509415	AG509416
length	758	770
length of high quality (start - end)	518 (48 - 565)	384 (83 - 466)
definition	CHROMAT_FILE: MSMg01no412_l08.b1 PHD_FILE: MSMg01no412_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:10 2005	CHROMAT_FILE: MSMg01no412_l08.g1 PHD_FILE: MSMg01no412_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:10 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCAGTAGACTGCCTGCAAGAGTGAGGTCTCTCCTTCTACAATGTG GCTCTGGGGATCGAACTTAGATCATTGGACTTAGCGGCAAGTGCCTTTAC CAGCAGAGTCCCTGTGTCGCTTGCTCTCCGGTTTCTTATTATTACTGCAT TATTTCCAGATGGGTCACAGACTTTGAGAGTGACCTAACTGTGCAAGGTC ATTGACCTCGGCAGCTGTGGCTGTTGCCCATAGAAAAGGCAAGCCAAAGC AACAGAAAAGAAAGACTGCTCAATATCAGGAGGTGCAGACAAGGTGTCCA CTGAACATGGAGGCTATGATAGAAGCAGTCACATTTAAAAACTGCTGCCT CCAGGCTGGAGAGATGGCTCAGAAGTTGGCTGCTCTTCCAGAGGTCCTGA GTTTAATTCCCAGCAACCACCTGGTGGCTCACAACCATCTGTAATGAGAT ATGGAGCCCTCTTCTGGCATGCAGGTGTATATACAGGCAGAACGCTGTGT ACATAATAAATCTTTATAAGAAAACCTGCCTGCCGACTCCATCTCGGACA TGCTCTTATGAAAGATGTTCTCTGACCTACGTGAGGGCTGCACAACTCCT TTCTTGCTGGGTTTTTTTTATGACAATTAAAACACATGGGACACTCCTTT TTTTATTGGAATTCTTATATAACTCTCCCGGGGCCTTGCCTTTGAAAACC TCAACTGT	NNNNCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTTTAAGAT TTATTTTATATATGTGAGTATACTGTCGCTGTCTTCAGACACACCAGAAG AGTGCATAGGAATTCATCACAGATGGTTGTGAGCCACCATGTGGTTGCTG GGAACTGAACTCAGGACCTCTGAAAAAGCAGTCAGTGCTATTAACCACTG AGCCATCTCTCCAGCCCGAATTAAGAATAAGCACTTTCTTTGAGAATAGT AGGAGCTTATGGGTGCTTGCTGTGTGTGCTTTCTTGTATGTGGTTCTGTG TGTGTGTGTGTGTGTGTGTTTTGANACAGGATTTGTGTAACAGCCCTGGC TGTCCTGGAACTCACTTTGTAGCCCAGGCTGGCCTCAGAGATCCACCTGC TCCTGCCTCCCAAGTGCTGGGGTTAAAGGTGCGGGCCATCACCGCCTGAC TCATTGGATGTGGTTCTTTCTTATCTTGGGCACTACCTAGCCTATCTCCC ATTGTCTTGCGCCATTTTTTGTTTCTAGCCCCACCTTCCCCTAAATATTC CGGACCGCCTTTTTCCATGAATTTGTTTCTGATTTCTCTTTTTTCACTTT CTTTCTTCCTCTCTTTTTCTCTCGTTTATTTTATTCCGCTCCCTCTTATT CTTTTTTTCCCTTCCCCTTTCCCCCTTTCTCCCTTTTCCCCCTTTTTATC CCTTCCTTTCTTCCCTTCCG
quality values	Open. Hide. 7 7 7 10 8 8 8 9 9 15 30 37 29 28 24 22 15 23 19 28 22 25 34 37 37 41 41 27 24 18 18 17 19 23 9 9 9 14 12 14 14 14 17 17 24 24 24 26 32 41 47 36 36 36 31 31 31 33 33 21 23 9 9 11 11 11 11 11 10 16 23 27 37 37 40 40 48 48 53 53 59 59 59 59 59 59 59 59 59 53 53 47 50 50 50 50 50 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 50 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 44 44 27 20 13 13 12 12 12 15 15 23 36 44 62 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 57 57 57 57 57 57 57 50 50 37 37 50 50 57 68 68 68 68 68 68 68 59 59 59 59 59 59 48 44 44 43 44 43 57 59 59 59 59 48 48 48 59 57 57 57 57 54 57 59 48 48 48 59 59 59 59 48 48 48 57 59 57 54 54 54 59 57 48 57 57 48 48 48 57 48 48 48 47 47 39 37 37 43 43 48 43 43 43 47 47 47 47 41 39 39 31 31 37 37 41 41 41 37 34 31 31 37 37 47 34 32 28 30 29 37 32 35 35 47 47 47 47 36 39 39 39 37 36 34 36 29 33 37 37 37 28 32 28 28 28 28 28 36 37 37 27 25 25 24 27 27 29 12 13 9 9 9 10 14 24 20 23 14 14 11 21 11 11 11 23 12 13 13 28 19 30 24 20 15 15 14 21 23 23 18 25 12 12 12 24 19 21 18 15 13 15 23 18 19 16 18 14 14 17 18 22 34 23 28 24 30 21 26 20 18 12 13 10 10 10 10 10 15 13 10 10 10 15 15 13 15 14 14 15 16 15 10 10 10 21 12 12 10 10 10 11 9 8 9 8 8 8 13 15 24 28 30 19 18 15 16 12 12 12 17 17 15 16 11 14 9 8 8 8 10 8 8 12 8 10 10 8 8 8 9 9 8 8 8 8 12 7 8 8 8 8 8 10 10 10 10 11 11 8 8 8 8 8 6 6 12 8 8 8 10 10 13 12 15 21 12 13 8 8 10 8 6 6 8 8 8 8 9 9 6 6 6 6 6 8 10 12 12 11 8 8 8	Open. Hide. 0 0 0 0 3 7 6 6 7 8 10 8 8 8 8 6 9 9 9 17 14 25 25 27 26 32 37 37 37 37 39 37 39 44 44 34 27 18 9 9 9 12 11 9 15 10 10 10 30 25 39 37 37 44 39 53 50 47 47 53 48 50 50 50 28 25 10 8 8 8 8 15 21 18 18 28 23 31 31 31 36 36 57 57 57 59 59 59 59 59 59 59 57 57 57 57 42 42 42 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 68 68 54 57 57 57 57 57 57 68 57 59 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 50 50 51 50 50 48 48 46 46 48 46 57 57 57 57 57 57 57 57 57 57 57 59 59 59 57 57 57 57 57 59 59 59 59 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 57 57 57 54 54 54 57 57 52 57 57 57 57 57 52 57 57 57 59 59 57 68 68 68 57 57 57 57 57 57 57 68 57 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 27 27 24 22 24 18 18 19 35 44 68 59 59 59 59 57 57 54 54 54 57 59 59 59 59 48 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 47 47 47 47 23 23 3 0 3 23 23 41 41 41 41 39 39 35 35 39 39 39 47 47 50 50 50 43 43 28 26 13 28 34 37 37 43 43 43 57 43 57 46 46 43 43 43 43 28 34 21 12 12 17 12 12 12 27 28 43 39 39 32 37 30 37 37 40 36 21 21 13 24 21 20 20 20 24 34 32 41 23 25 25 33 34 37 28 28 28 37 29 30 28 32 32 28 19 11 11 11 21 21 27 22 11 11 12 27 23 28 14 14 14 21 14 19 12 18 12 12 12 11 11 11 19 12 12 11 15 15 12 12 13 15 15 18 17 14 15 15 15 9 10 9 8 8 8 15 11 18 15 15 8 10 6 6 8 10 12 11 9 8 10 6 7 8 8 8 8 9 10 10 10 10 11 11 9 8 8 8 8 8 9 10 10 10 10 9 8 8 6 6 6 6 8 8 8 10 10 17 18 10 10 11 8 10 8 9 9 9 10 9 10 10 10 13 10 10 11 14 13 12 9 9 8 8 8 8 8 8 12 8 8 8 8 8 10 8 6 6 10 10 14 13 17 12 9 9 10 10 8 8 8 8 12 8 8 8 10 9 8 8 6 6 6 8 8 8 8 8 8 11 12 9 9 9 9 13 12 18 12 11 10 10 10 8 8 8 8 8 8 8 8 10 16 19 24 19 13 9 9 9 9 11 10 10 9 9 8 8 8 8 8 6 6 8 6 6 6 8 8 12 10 16 16 10 10 8 8 8 8 10 6 6 10 8 19 18 19 13 13 10 13 11 13 10 8 8 8 8 8 8 8 10 12 8 6 6 8 8 8 8 8 9 8 9 12 11 17 11 8 8 9 8 8 8 13 12 9 9 9 12 12 12 12 14 14 18 15 10 8 6 6 8 8 11 8 12 10 10 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no412_l08.b1 MSMg01no412_l08.b1 CHROMAT_FILE:
MSMg01no412_l08.b1 PHD_FILE: MSMg01no412_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:10 2005
         (518 letters)



>mm_chr7_73416132_73417046
          Length = 915

 Score =  801 bits (414), Expect = 0.0
 Identities = 488/514 (94%), Gaps = 3/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtagactgcctgcaagagtgaggtctctccttctacaatgtggctctggggat 64
           |||||||||| || |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaattcagtaaacagtttgcaagagtgaggtctctccttctacaatgtggctctggggat 603

                                                                       
Query: 65  cgaacttagatcattggacttagcggcaagtgcctttaccagcagagtccctgtgtcgct 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 602 cgaacttagatcattggacttagcggcaagtgcctttaccagctgagtccctgtgtcgct 543

                                                                       
Query: 125 tgctctccggtttcttattattactgcattatttccagatgggtcacagactttgagagt 184
           ||||||| |||||||||| ||   ||||||||||| ||||||||||||||||||||||||
Sbjct: 542 tgctctctggtttcttatcat---tgcattatttctagatgggtcacagactttgagagt 486

                                                                       
Query: 185 gacctaactgtgcaaggtcattgacctcggcagctgtggctgttgcccatagaaaaggca 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gacctaaccgtgcaaggtcattgacctcggcagctgtggctgttgcccatagaaaaggca 426

                                                                       
Query: 245 agccaaagcaacagaaaagaaagactgctcaatatcaggaggtgcagacaaggtgtccac 304
           ||||||||||||||||| ||||||||||||| || ||||||  |||||||||||||||||
Sbjct: 425 agccaaagcaacagaaaggaaagactgctcagtagcaggagacgcagacaaggtgtccac 366

                                                                       
Query: 305 tgaacatggaggctatgatagaagcagtcacatttaaaaactgctgcctccaggctggag 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 tgaacatggaggctatgatagaagcagtcacatttaaaaactgctgcctccagggtggag 306

                                                                       
Query: 365 agatggctcagaagttggctgctcttccagaggtcctgagtttaattcccagcaaccacc 424
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||  
Sbjct: 305 agatggctcagaggttggctgctcttccagaggtcctgagtttaattcccggcaaccata 246

                                                                       
Query: 425 tggtggctcacaaccatctgtaatgagatatggagccctcttctggcatgcaggtgtata 484
           ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 245 tggtggctcacaaccatctgtaatgagatctggcgccctcttctggcctgcaggtgtata 186

                                             
Query: 485 tacaggcagaacgctgtgtacataataaatcttt 518
           ||||||||||||||||| ||||||||||||||||
Sbjct: 185 tacaggcagaacgctgtttacataataaatcttt 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 915
Length adjustment: 10
Effective length of query: 508
Effective length of database: 905
Effective search space:   459740
Effective search space used:   459740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information