BAC Information

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BAC

Clone NameMSMg01-413B11
Chromosome7 (Build37)
Map Location 131,561,029 - 131,561,500
singlet/doubletsinglet
Overlap genenone
Upstream geneLcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413B11.T7 (MSMg01no413_b11.b1)MSMg01-413B11.TJ (MSMg01no413_b11.g1)
ACCAG509706AG509707
length731753
length of high quality
(start - end)
500 (65 - 564)40 (138 - 177)
definitionCHROMAT_FILE: MSMg01no413_b11.b1 PHD_FILE: MSMg01no413_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:40 2005CHROMAT_FILE: MSMg01no413_b11.g1 PHD_FILE: MSMg01no413_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCAAA
AGTTTTACCTCTTTTGGGTATGTCAGCAGTTCCACCATGTCTTTTAGTCG
CAGCAGTAAACCTTCACAAGAGTGAACAGTCAACTCCTGGATAAATGGGA
CCAAGGAGCAGAAAATGGGATAAAAGGCAGATTTGAAATGTTTTTGCCAA
GTGTTCTCTTTTTTAACCAACATACTTACCCCACTTCCACACCCCTAATT
CCTCCCTTTGTTTGCTGTTTGCTGTTGCAGCTTCAGGCCCTGGCATCCTA
ATCCTACCTCTTATTTTCTCCACCCTCAACCCTCAACCCACCCCCACCCC
CACCCCCACCTTGGCTCATGTAGGGAAGAGCAACTCAGAGAAGCAGAATT
GAAAGGGCTCAAGGAGCCTTGTAAAGCAGTTACGCTGAGGATGGGACTGA
GTCAGCCAGGAATCCTGAGAGACATGTTTCTGTCAGGTGTCACAGCAGCA
GGCAAGAAGGATTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTCATAGGAAAGGAAGCGTTGCTGCGTTGAAGGCCCCTACAAGTAC
TTAGTGAACCAAACACCATGTGTGTTCCTGGCACCAAACCTCCTGACTAT
GCCCTCTTTGACAAGTTTTCTGAAAGGGTGAGGTTCCATGGGATCGGTTG
TAACTACTCCCTCCTGAGCTTAGCACAAGTG
TAGTGTAGTCTGGTGGCCGTCTGGCTGCACAXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATTTATTCATTTCTCAAATATTGTGCACATGAT
GATTCTTTTCCCCTAGCACAAACACATTCAGGATGAAGTTGTCATTCTAC
CTTCCCAGAGTCTCCTTTATTGCCATATCCCAATTCCCAGTGACTCCCTA
AGGAATTCCCGACTGCCCTTGCTTTGCAGGATGAAGGGGATTAAGCACTG
TGTCTGCTGCCATCCAGGATTTCTGCTGCTCAAGAAACTCTCATTTCTTG
TGCATCGATTTTGTTTTTGATGGTATAGACAACCTGTCGAGAGAGTTTGC
TACACCCAGATGTTTCATCCTCTCCCAATTACGGGACTCTTTCAGATTGT
AAAATTACTGCGCACATGTCCAGGGACAGTAAGAAGAGCACCTGACATCG
AAATTGACCATATTGTTCTGCGTTAAGGCTATATTTCCCGACTGATCTTA
TCCGATCGATTATGTATCCCTCTTATCGCTGTTGTTTCATCTCGATCTGC
CTTGTCCATTTTCTCATTACGTCCCACCGTTTGTGCTGTTTTTTCCCCAC
CCCCTTGCTTAATTTTCTCCTTAGGTTCCCTCTTGTGTTCTTACTCCCCC
TTATTACCTCTCTACCTTTTTTTTTCCCCTTGTTCCCTGTCCTCCTTATT
ATTTTCCGTCTAGTACATATATTGTTCTCCCCTTTTGTTTCTTTTCCCAC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_b11.b1 MSMg01no413_b11.b1 CHROMAT_FILE:
MSMg01no413_b11.b1 PHD_FILE: MSMg01no413_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:40 2005
         (500 letters)



>mm_chr7_131561029_131561928
          Length = 900

 Score =  793 bits (410), Expect = 0.0
 Identities = 454/476 (95%), Gaps = 14/476 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtatgtcagcagttccaccatgtcttttagtcgcagcagtaaaccttcacaagagtg 60
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 472 tgggtatgtcagcagctccaccatgtcttttagtcgcagcagtaaaccttcagaagagta 413

                                                                       
Query: 61  aacagtcaactcctggataaatgggaccaaggagcagaaaatgggataaaaggcagattt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aacagtcaactcctggacaaatgggaccaaggagcagaaaatgggataaaaggcagattt 353

                                                                       
Query: 121 gaaatgtttttgccaagtgttctcttttttaaccaacatacttaccccacttccacaccc 180
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 352 gaaatgtctttgccaagtgttctcttctttaaccaacatacttaccccacttccacaccc 293

                                                                       
Query: 181 ctaattcctccctttgtttgctgtttgctgttgcagcttcaggccctggcatcctaatcc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctaattcctctctttgtttgctgtttgctgttgcagcttcaggccctggcatcctaatcc 233

                                                                       
Query: 241 tacctctta----ttttctccaccctcaaccctcaa------cccacccccacccccacc 290
           |||||||||        |||||||||||||||||||      ||||||||||||||||||
Sbjct: 232 tacctcttaggac----ctccaccctcaaccctcaacccacccccacccccacccccacc 177

                                                                       
Query: 291 cccaccttggctcatgtagggaagagcaactcagagaagcagaattgaaagggctcaagg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cccaccttggctcatgtagggaagagcaactcagagaagcagaattgaaagggctcaagg 117

                                                                       
Query: 351 agccttgtaaagcagttacgctgaggatgggactgagtcagccaggaatcctgagagaca 410
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agccttgtaaagcagttacactgaggatgggactgagtcagccaggaatcctgagagaca 57

                                                                   
Query: 411 tgtttctgtcaggtgtcacagcagcaggcaagaaggattatttatttatttattta 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  tgtttctgtcaggtgtcacagcagcaggcaagaaggattatttatttatttattta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)