BAC Information

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BAC

Clone NameMSMg01-413D15
Chromosome7 (Build37)
Map Location 115,370,647 - 115,371,314
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1
Downstream geneOlfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D15.T7 (MSMg01no413_d15.b1)MSMg01-413D15.TJ (MSMg01no413_d15.g1)
ACCAG509810AG509811
length723750
length of high quality
(start - end)		684 (33 - 716)247 (67 - 313)
definitionCHROMAT_FILE: MSMg01no413_d15.b1 PHD_FILE: MSMg01no413_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:50 2005CHROMAT_FILE: MSMg01no413_d15.g1 PHD_FILE: MSMg01no413_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTTGTTT
ATCTCTGAGTCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCAC
CTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAATGTCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTG
CCGGTGTGTTTTGCCCAATTTCTTTTATTATTATTATTCTTTAATCTTTA
TTTTAGCTAATTAAGTTGTTTTTATTATTAAAACAAAATAATACAGGATG
CTTTTAAATGTAATAAATTTACTTCTTATAGTTGTGTGTATAGCATTGGA
CGTCCAATATCAAGAAACCAGTAGATTCAACATCTAATAAAGGCAAATAT
TCTTCCCTACCAATGGGGCCTCTTGCTACATGTCATATTGCCCAAGAAGT
CATGCATATTCCTTCTACATTTTTTCTTATTTTATTTTTTTATTAGCTAT
TTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTGTTTTCTCCTCTG
AAACTCCCTATCCACCTCCCCTCCTCCCCCTGCCCGCTCACCAACCCACC
ACTCCTGCTTTCTAACGCTGTCAATCCCATTTATTGGGACACATAACCTT
CACAGGACCAAAGACCTTTCCTCCCATTGATGACCTATTAGGCCATGCTC
TGCTACATATGCATCTAGAACCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAACTATGACTGTTTTTTTCAATAAAATATGTAT
AAAATGAGAGAATACAGGGTTAGATATGGCTTGGAGGTTAAGAGCATGAG
TTGCTCTTCCAGAAGACCAGGGTTTGATTCCTAGTTCCTACATGGTAGGA
GTCCCAGCTCTAGGGGATATGGCACACTCTTCTGACCTCCATGGGCACCA
AGCAAGCACATGGTATATAGGTATACATGTAGACAAAATACTCATGCACA
TAAAATAGACAAATCTTTTTAAAGAAAACAAAAATGCTCAGGTCTAAAGT
AAATAAAAATAAATTGTTTAAAAATACTATATGCAATATATTTTTTTAAT
AGTGAAATGGCCCAAGAGTATACTGAGTGCTTCATCTCCACAGGAGTAAG
GCAATCCTGATTATCCTCAGTGGAGTATCCTTGTCAATAGATTCCTAGAA
GATAATAGCCATTGTCTAAGATGTAATTTAGGTTATCTTCCAATTTGGCT
GGGTTATAGTTCACTAGCAGAAGAGCCATGAAAGAATCCTGTTGGGAAGA
GCATCCTTCCAACACCAGTCCCACTAGCTTCAATCAGTAAACTTCTGTAN
AGGAGGAGGCTGTTTTTCAGACTGACATTATGGTGGATGCCAATGCTATC
CTCATTTCGAAGGGTTCCGAAACTTCCTTCCGCTTTAATTTTAAGGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d15.b1 MSMg01no413_d15.b1 CHROMAT_FILE:
MSMg01no413_d15.b1 PHD_FILE: MSMg01no413_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:50 2005
         (684 letters)



>mm_chr7_115370416_115371500
          Length = 1085

 Score = 1054 bits (545), Expect = 0.0
 Identities = 643/679 (94%), Gaps = 14/679 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttgtttatctctgagtcccattttttaatggggttatttgattttctggagtc 65
           |||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct: 899 gaattctttgtttagctctgagcccca-tttttgatggggttatttgattttctggagtc 841

                                                                       
Query: 66  caccttcttgagttctttatatatattggatattagtcccctatctgatttaggataggt 125
           |||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cac---cttgagtt-tttatatatattggatattagtcccctatctgatttaggataggt 785

                                                                       
Query: 126 aaatgtcctttcccaatctgttggtggcctttttgtcttattgccggtgtgttttgccca 185
           ||| ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct: 784 aaaggtcctttcccaatctgttggtggcctttttgtcttattgacgttgtcttttgccca 725

                                                                       
Query: 186 atttcttt-tattattattattctttaatctttattttagctaattaagttgtttttatt 244
           |||||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 724 atttctttgt-ttattattattctttaatctttattttggctaattaaattgtttttatt 666

                                                                       
Query: 245 attaaaacaaaataatacaggatgcttttaaatgtaataaatttacttcttatagttgtg 304
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 665 attaaaacaaaataatacaggatgattttaaatggaataaatttacttcttatagttgtg 606

                                                                       
Query: 305 tgtatagcattggacgtccaatatcaagaaaccagtagattcaacatctaataaaggcaa 364
           |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 605 tgtagagcattggatgtccaatatcaagaaaccaatagattcaacatctaataaaggcaa 546

                                                                       
Query: 365 atattcttccctaccaatggggcctcttgctacatgtcatattgcccaagaagtcatgca 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 545 gtattcttccctaccaatggggcctcttgctacatgtcatattgcccaagaagacatgca 486

                                                                       
Query: 425 tattccttctacatttttt-cttattttatttttttattagctattttctttatttacat 483
           ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 485 tattccttctacatttttttcttatttcatttttt-attagctattttctttatttacat 427

                                                                       
Query: 484 ttcaaatgttatcccctttcctgttttctcctctgaaactccctatccacctcccctcct 543
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    |
Sbjct: 426 ttcaaatgttatcccctttcctggtttctcctctgaaactccctatccacctccc----t 371

                                                                       
Query: 544 -ccccctgcccgctcaccaacccaccactcctgctttctaacgctgtcaatcccatttat 602
            ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 370 gccccctgcccgctcaccaacccaccactcctgctttctaaccctttcagtcccatttat 311

                                                                       
Query: 603 tgggacacataaccttcacaggaccaaagacctttcctcccattgatgacctattaggcc 662
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgggacacataaccttcacacgaccaaagacctttcctcccattgatgacctattaggcc 251

                              
Query: 663 atgctctgctacatatgca 681
           |||||||||||||||||||
Sbjct: 250 atgctctgctacatatgca 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space:   724550
Effective search space used:   724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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