BAC Information

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BAC

Clone NameMSMg01-414I08
Chromosome7 (Build37)
Map Location 86,724,408 - 86,724,664
singlet/doubletsinglet
Overlap genenone
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream geneRhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414I08.T7 (MSMg01no414_i08.b1)MSMg01-414I08.TJ (MSMg01no414_i08.g1)
ACCAG510798AG510799
length777793
length of high quality
(start - end)
257 (70 - 326)253 (75 - 327)
definitionCHROMAT_FILE: MSMg01no414_i08.b1 PHD_FILE: MSMg01no414_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:35 2005CHROMAT_FILE: MSMg01no414_i08.g1 PHD_FILE: MSMg01no414_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAATACCGCGGA
ATTCCAGAAGTGTTACACAAACAGTTTAGAGACTCCTCTTCCAAAGGATG
GCAGGGTCAAGTGTTGGCATCTGGGAGTCGCCACCCAAACCACTCAGACA
CCAGTCTCAGACAAGTAGAGATAGTTATTGAATGCCATACCCCAAGACTG
ATTGATCAGGGCCACATATCCAGCCTCAGGAGCTGGTGGTGGCACTGAGT
TAAGATTTCTACAGGAATTTTAAGCTTAAAACATCTGTGCCAAGTTATTC
CACCAATCAGGATTTAGGGACAGTTGGTCNCCTTAGGAACAAGCCTTTGT
TGTACACTTATCCTGTCGTCATTGGCGGCAGCAGACTTGCCTTGTCTGAT
ATTCATGTCTTGTCTATCAGGATGGGACTTGTCTAACATTCAGGTCTTAA
CTCATCAACTAGGACATCATTTACCCAGGTACATGTCTCTCTTTGCCACG
TGGGATGGCAGTTCCCAGGGAGGCCTTAGGAACTTATACTTTACTCAACC
ACCACTCCAAATGGAAGTCTTATTCCAAATAATTTCTTACATTGGTGCAG
GTGTCTCTCTTACGTGGGGTCCCTTCCAGGGGTAGTTGTAAGAAACAAAT
ANCCCTGAAGCCCAATTTTTTTTTTTTTTTTTGTTGCNTGGTTGGCGGTG
TAGTTCCCATGGTACCGTGGGTTCCCTTTACTAACTTATCGCCCCGCCTT
TCATCTTGTTCTTTTTCCTCCGTTTTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGGATCTGTGGATGAACTAGGCGG
GATCACGCACGGCCTTGTCGGTACTCACTATGGTACCAAAGCACCTAGCA
GAATCTCCAGGGCCAGTGAGGTGAGCAGCCTGGAACATGCCAACACAAAA
GCAATTCTTGCTTCAAAGAGAACAAAAGAGTTTATTCGGGAACAGATGAC
CATGACTAGTTACCATGGCTGTATGTAGGTTGTTTTGGATACCCTGCTCC
ATTGTGGATGGGTTATAGTCACAGATCATTTATTGTTGGAAAGCAGCGTG
CTTACTGGCATCAGCGAATGCATCGAGGGAACTCTATGTGCAGAGTCCAG
GGCATCACTCACCCTTTTAGACAGAGGCCTGTTAGCCCATGCTGGCCTTC
AATTCTGTAAGTAGCTGAGAAGGATATTGAACTTTTAATCCTCCTGCCCT
CATCTCTGCAGAGCTGGGATTTCAGGTGTGTACCACTGTGTCCAGATTCC
GCAGTCGTCAGTATAAAACGTAACCCACTCAACGCTCTTTCTTTTCACTT
CTAAAGGTCCTACAGTGCATTTTGGCCGCCCTATCGCCGAATGATTATAC
CCTCCCGATTATGCAGGGCTGTTTTTCTCTTTTTTTCTTGGTTCCCTTGT
GGCCCATACCTTCATGTTAGTCTTTACTGCTTTCTTATCCCGTTATATCC
CCTCTCTCCTATGTCTTTTTCTCTTCCTTTCTTGCGCGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_i08.g1 MSMg01no414_i08.g1 CHROMAT_FILE:
MSMg01no414_i08.g1 PHD_FILE: MSMg01no414_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:35 2005
         (253 letters)



>mm_chr7_86724208_86724866
          Length = 659

 Score =  439 bits (227), Expect = e-128
 Identities = 247/257 (96%), Gaps = 6/257 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggatctgtggatgaactaggcgggatcacgcacggccttgtcggtactcactatggt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggatctgtggatgaactaggggggatcacgcacggccttgtcggtactcactatggt 260

                                                                       
Query: 61  accaaagcacctagcagaatctccagggccagtgaggtgagcagcctggaacatgccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaagcacctagcagaatctccagggccagtgaggtgagcagcctggaacatgccaac 320

                                                                       
Query: 121 acaaaagcaattcttgcttcaaagagaacaaaagagtttattcgggaacagat------g 174
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||      |
Sbjct: 321 acaaaagcaattcttgcttcaaagagaacaaaagagtttattccggaacagatacgaatg 380

                                                                       
Query: 175 accatgactagttaccatggctgtatgtaggttgttttggataccctgctccattgtgga 234
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatgactagggaccatggctgtatgtaggttgttttggataccctgctccattgtgga 440

                            
Query: 235 tgggttatagtcacaga 251
           |||||||||||||||||
Sbjct: 441 tgggttatagtcacaga 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 659
Length adjustment: 9
Effective length of query: 244
Effective length of database: 650
Effective search space:   158600
Effective search space used:   158600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)