BAC Information

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BAC

Clone NameMSMg01-414M12
Chromosome7 (Build37)
Map Location 115,796,040 - 115,796,288
singlet/doubletsinglet
Overlap genenone
Upstream genePpfibp2, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509
Downstream geneOlfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414M12.T7 (MSMg01no414_m12.b1)MSMg01-414M12.TJ (MSMg01no414_m12.g1)
ACCAG510996AG510997
length751772
length of high quality
(start - end)
454 (75 - 528)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no414_m12.b1 PHD_FILE: MSMg01no414_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:56 2005CHROMAT_FILE: MSMg01no414_m12.g1 PHD_FILE: MSMg01no414_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCTATCCCTTTCTTAAGAAAAAAAAAGTATACTTGCTGTCTC
CTAAGAAGCACAGGGTTGTGATCATGGGATACTGATTCATAAGATAATCA
AAAGAAACCTGGAGTAAATAAGTGGAAGAGAGGTACAATTAAAGACTGGA
CTTGTGTTATACAGAATATAAGCTATCCAGAGAATTTTTTAGGATAAAAA
AGAGAGAAATGGAAATTCTGAAGCCACCAGGTTCACAGGTCCTCAATTGT
GCCCTGGAGCATATCTTCTGCTCTTTACTCNCTCCACCTTGCCCAAAACC
AGAGACAGCCTGATCCCCAAAGGAGTTCTGGGAGAATCACAATCCCTGAT
CTCAAGCTGTATTGCAGAGCAATAGTTATAAAAACTACAAGGTACGGAGA
CAGGTTGATCAATGAAATATAGTTAAAGACCCAGAAATAAACCCATATAC
CTGTGGTCACCTGATCTTTGACAAAGAAGCCAATAAAACCCAGTGAGAAA
AAGTATTTTAAACAAATGGTGCAGGATCAACTAGTGGTCAGAATGCCGAA
GAACACCAATTGATTCATTCTTATCTCCCTTGAAAAAGCTCATGTCAAGG
TGGAACATGAACTTTCTTTTTTAACCCGATACCCTGAAACTAACAGAAAA
AGAAAGTGGTGAAGAACCCTCACACACGTTTGCCAATGAGAAAATTTTCC
N
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCAGAAATTCCAGGGAGTGTGTGTAGTGCTAGTGTTAT
AAGCAGGGGCCTCCTACTTCTTCTCATGGATACTAGGGATCAAACTCAGG
TCCTCAGCCTTGTTTATCAAACACTTTGCAGACTGAGCCATTCACTCAGC
CCTTAATTTCATTTGTAAAAGGAATAACATACTGACTGTTTTGCTGTAAG
TTCTGAAGTTAGGAGAAATAATATTGAAGATGATATGATTGGTACCATAA
GTGTTAAAGAATTTGATGCTGATANGGACATTTAGAAGCCATTTACAGGT
AAAATAAAAGTCAGTACACTAAGCAGGGGTTTGTATGAAAGTTGATACAT
TCTGAGAACAATGTATTCTGAAACATGGTTGCCTTATGAGAAATGAATGA
CAAGGATTATATCACTTGATCTATCTCTTTCTGACTGGCTCATGTTTTCC
CCAGAAATAATCTCATGGCATTCATTTCTTTATCAGGAACATACATTAGC
AGAAAGCTGAAGGACTTGGTAAAGTTTTCAAGTCAAAAACTAAATTGTAT
TATGCAAGAGCTAAATGTGCCCCCAGAACCTATTGTACCCAAAGATATTT
TAGGAAGTTTATTTTCTTTTTTTTCCAGAAATTCCTATAAACAACAATAA
CCCAAAGAAGCCCATATCACATCCCCACATTTACTTGGTGGGGAGGTTTT
TTCCATTATATCTCCATTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_m12.g1 MSMg01no414_m12.g1 CHROMAT_FILE:
MSMg01no414_m12.g1 PHD_FILE: MSMg01no414_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:56 2005
         (249 letters)



>mm_chr7_115795709_115796357
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagggagtgtgtgtagtgctagtgttataagcaggggcctcctacttcttctcatggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccagggagtgtgtgtagtgctagtgttataagcaggggcctcctacttcttctcatggat 521

                                                                       
Query: 61  actagggatcaaactcaggtcctcagccttgtttatcaaacactttgcagactgagccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 actagggatcaaactcaggtcctcagccttgtttatcaaacactttgcagactgagccat 461

                                                                       
Query: 121 tcactcagcccttaatttcatttgtaaaaggaataacatactgactgttttgctgtaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcactcagcccttaatttcatttgtaaaaggaataacatactgactgttttgctgtaagt 401

                                                                       
Query: 181 tctgaagttaggagaaataatattgaagatgatatgattggtaccataagtgttaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctgaagttaggagaaataatattgaagatgatatgattggtaccataagtgttaaagaa 341

                    
Query: 241 tttgatgct 249
           |||||||||
Sbjct: 340 tttgatgct 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)