BAC Information

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BAC

Clone NameMSMg01-414P09
Chromosome7 (Build37)
Map Location 108,140,493 - 108,140,975
singlet/doubletsinglet
Overlap genenone
Upstream geneChrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6
Downstream geneP2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414P09.T7 (MSMg01no414_p09.b1)MSMg01-414P09.TJ (MSMg01no414_p09.g1)
ACCAG511132AG511133
length792806
length of high quality
(start - end)
489 (42 - 530)223 (74 - 296)
definitionCHROMAT_FILE: MSMg01no414_p09.b1 PHD_FILE: MSMg01no414_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:11 2005CHROMAT_FILE: MSMg01no414_p09.g1 PHD_FILE: MSMg01no414_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGATCCGCGGAA
TTCCTGCTCTTACCTCCTGAGTGCTGGGATTACAGGCGTACATTAAGTCC
CAGTAGGAAGGGTTTACTCTGACTCACAGTAGAAGGGTTTCCAGTTCATG
ATTGGTTTATTCTGTGGCTTGAGGTCACCAGAGAAACCTAAGTTTGATGA
CAAACCAACTTCAGTATGTTGTCCTCGGAACTCCACATGTGCTCCCCACA
ACACAAATAAATGTGATTCTAAGAAATGTTCAAAGGAAGCCCTCCCCCAA
CTTCTGCCCAGAAAGCTCTCTCATCTCTTTGTACCATGTGAGGGCTCAAC
AGGAAGTTCATGTGTTGTAACTGGGAAGAACCCAGCCATGTGACCTCACA
CCACCAAACTCTGACTTGTGAAACATCACTGTCCACCATGGAAAAGCCAT
GACAGTAGCAAGGGGGTTGGAGAGAGGGCTCAGCTGTTAAAAACACTTGC
TACTCGCCAGGCAGTGGTGGTGCATGCCTTTTATCCCAGCACTTGGGACG
CAGCAGATTTCTGAGTTCAAGGGCAGCCTGGTCTACAGAGTGATTTCTAG
GACAGCCCAGGTCTACACAGAAAAACCTGTCTTCCTCTATCCATTAACTT
TACCACCTTAATATCTTTTTCTTCCTCTGGGAAATACCCTGGTTTATTTC
CTAATATCACCCTGGGGGTCCCCATACCCAACCTCTAATGAATTTCTTTT
TAAAATGGTATTTTTTTTTTTTTATTCTAAGACGCCCACATC
ACATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCAGAAATTCCAGCCTGTACAACTCTCCAACAGG
ACTGACTGCTGGAGAGGTTCTTAGCATCCCGTTTGGAAAGGTCCCAGTTT
TACTTGGGAGGCAGACAGAGGCAGGTGGATTTCTGTTAGTTTGAGGTTAG
CCTGGTCTACAGAGTTCCAGGATGGTCAAGGCTAGAGAGAAACTGTCTCT
CCATAAAAAGAAAATGAAAGGCAGGGGGAGGGAGGGAGGGAGGGAGGTTT
TTTTNNNNNNNNNNNTNTNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNGNTTTTTTCTTTTTNTTTTTTTTTGGTTTTGGTTTTGTTTTG
TTTTGTGTTCCCCCCCCCCCCCTTTTTTTCTCTTTTTCCCCTTCTTCTCT
TCTTTTCTCTCTCTCTCCTTCTTTCTTTCTTTCCTCTTTCTTTTTTTCCC
CCTTCTTCTGCTTTCCTTCTTCTTCTTTCCTCTTTTTTTTTCTTTTTCTA
TTTTTTCCTCTCTTCGCGTTTCTTGTCCCTTCCTCCCCTTTCTTCTCTCA
CCTTCTTTCCCTCCCTCCTTTTCTTTCTTCCTCCTTTTTCTTTTTTCGCT
TTCTTTTTTTTCTTTTCTTCCTCTCTTTTATTTTTTTTTCTGCTCGCCGC
CTCTTTCTTCCTCTTTTCTTTTCTCTCTTTCTTTTTTCTTTTCCTCTCCC
TTTTTTCCTCTTACCATTTTATCTTTATCCTCTCTCCCCTTTCNTTTTCC
TTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_p09.b1 MSMg01no414_p09.b1 CHROMAT_FILE:
MSMg01no414_p09.b1 PHD_FILE: MSMg01no414_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:11 2005
         (489 letters)



>mm_chr7_108140311_108141199
          Length = 889

 Score =  888 bits (459), Expect = 0.0
 Identities = 477/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctgctcttacctcctgagtgctgggattacaggcgtacattaagtcccagtagg 66
           ||||||||| ||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcctgttccgacttcctgagtgctgggattacaggcgtacattaagtcccagtagg 606

                                                                       
Query: 67  aagggtttactctgactcacagtagaagggtttccagttcatgattggtttattctgtgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aagggtttactctgactcacagtagaagggtttccagttcatgattggtttattctgtgg 546

                                                                       
Query: 127 cttgaggtcaccagagaaacctaagtttgatgacaaaccaacttcagtatgttgtcctcg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cttgaggtcaccagagaaacctaagtttgatgacaaaccaacttcagtatgttgtcctcg 486

                                                                       
Query: 187 gaactccacatgtgctccccacaacacaaataaatgtgattctaagaaatgttcaaagga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaactccacatgtgctccccacaacacaaataaatgtgattctaagaaatgttcaaagga 426

                                                                       
Query: 247 agccctcccccaacttctgcccagaaagctctctcatctctttgtaccatgtgagggctc 306
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agccctccctcaacttctgcccagaaagctctctcatctctttgtaccatgtgagggctc 366

                                                                       
Query: 307 aacaggaagttcatgtgttgtaactgggaagaacccagccatgtgacctcacaccaccaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aacaggaagttcatgtgttgtaactgggaagaacccagccatgtgacctcacaccaccaa 306

                                                                       
Query: 367 actctgacttgtgaaacatcactgtccaccatggaaaagccatgacagtagcaagggggt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 actctgacttgtgaaacatcactgtccaccatggaaaagccatgacagtagcaagggggt 246

                                                                       
Query: 427 tggagagagggctcagctgttaaaaacacttgctactcgccaggcagtggtggtgcatgc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 245 tggagagagggctcagctgttaaaaacacttgctactcgccaggcagtggtggcgcatgc 186

              
Query: 487 ctt 489
           |||
Sbjct: 185 ctt 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)