This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-415C10
Chromosome
7 (Build37)
Map Location
144,480,398 - 144,672,331
singlet/doublet
doublet
Overlap gene
Ebf3
,
9430038I01Rik
,
Txnl2
Upstream gene
LOC546009
,
EG621677
,
EG668771
,
Mgmt
,
EG621804
Downstream gene
LOC435235
,
Tcerg1l
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC546009
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:546009
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 95 ESTs, 4 Proteins
pseudo
: _no_value
name
EG621677
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:621677
MGI:3644248
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
EG668771
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668771
MGI:3648409
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 698 ESTs, 4 Proteins
pseudo
: _no_value
name
Mgmt
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17314
MGI:96977
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG621804
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:621804
MGI:3645889
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
name
Ebf3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13593
MGI:894289
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
9430038I01Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:77252
MGI:1924502
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs
name
Txnl2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:30926
MGI:1353653
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC435235
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:435235
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins
pseudo
: _no_value
name
Tcerg1l
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70571
MGI:1917821
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG621677
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94381081
GeneID:621677
MGI:3644248
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: predicted gene, EG621677
transcript_id
: XM_896571.2
name
Mgmt
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:114326520
GeneID:17314
MGI:96977
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: O-6-methylguanine-DNA methyltransferase
transcript_id
: NM_008598.2
name
EG621804
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94381083
GeneID:621804
MGI:3645889
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
product
: predicted gene, EG621804
transcript_id
: XM_886207.2
name
Ebf3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:83816925
GeneID:13593
MGI:894289
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: early B-cell factor 3
transcript_id
: NM_010096.2
name
9430038I01Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149257744
GeneID:77252
MGI:1924502
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs
product
: RIKEN cDNA 9430038I01 gene, transcript variant 1
transcript_id
: XM_133909.7
name
Txnl2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142348626
GeneID:30926
MGI:1353653
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: thioredoxin-like 2
transcript_id
: NM_023140.4
name
Tcerg1l
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142364215
GeneID:70571
MGI:1917821
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transcription elongation regulator 1-like
transcript_id
: NM_183289.2
name
EG621677
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82915324
GeneID:621677
MGI:3644248
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_901664.1
name
Mgmt
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678878
CCDS:CCDS21945.1
GeneID:17314
MGI:96977
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006307 - DNA dealkylation [Evidence IDA]; GO:0006281 - DNA repair [Evidence IMP]; GO:0043281 - regulation of caspase activity [Evidence IMP]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
note
: O-6-alkylguanine-DNA alkyltransferase
product
: O-6-methylguanine-DNA methyltransferase
protein_id
: NP_032624.1
name
EG621804
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94381084
GeneID:621804
MGI:3645889
definition
codon_start
: 1
product
: similar to acidic ribosomal phosphoprotein P1
protein_id
: XP_891300.2
name
Ebf3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753706
CCDS:CCDS21946.1
GeneID:13593
MGI:894289
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: Olf-1/EBF-like 2
product
: early B-cell factor 3
protein_id
: NP_034226.1
name
9430038I01Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149257745
GeneID:77252
MGI:1924502
definition
codon_start
: 1
product
: hypothetical protein LOC77252 isoform 1
protein_id
: XP_133909.5
name
Txnl2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31981269
CCDS:CCDS21948.1
GeneID:30926
MGI:1353653
definition
GO_function
: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]
GO_process
: GO:0045454 - cell redox homeostasis [Evidence IEA]
codon_start
: 1
note
: PKC interacting cousin of thioredoxin
product
: thioredoxin-like 2
protein_id
: NP_075629.2
name
Tcerg1l
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34304097
GeneID:70571
MGI:1917821
definition
codon_start
: 1
exception
: mismatches in translation
product
: transcription elongation regulator 1-like
protein_id
: NP_899112.1
name
LOC435235
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435235
definition
number
: 1
pseudo
: _no_value
name
LOC435235
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:435235
definition
number
: 2
pseudo
: _no_value
name
LOC546009
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149257743
GeneID:546009
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 95 ESTs, 4 Proteins
product
: similar to CDNA sequence BC005624
pseudo
: _no_value
transcript_id
: XR_034426.1
name
EG668771
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149257820
GeneID:668771
MGI:3648409
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 698 ESTs, 4 Proteins
product
: predicted gene, EG668771
pseudo
: _no_value
transcript_id
: XR_034862.1
clone name
MSMg01-387J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-471M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-103F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-147E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181M15
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-289N21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-429K20
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-382A18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-377B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182H04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-517D24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-441N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-425O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-386J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-534O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-360B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-461K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448G04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267A08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-026E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080J06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204F03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-186C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-112O23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258H03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-255M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-276N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-127C20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-086H03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-002F04
singlet/doublet
doublet
plural/unique
unique
clone name
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B6Ng01-146I01
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B6Ng01-257H02
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B6Ng01-093C05
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B6Ng01-307G02
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B6Ng01-315N13
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B6Ng01-072F18
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B6Ng01-185H01
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B6Ng01-213E06
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B6Ng01-182I07
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B6Ng01-048I12
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B6Ng01-347E12
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B6Ng01-048K10
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B6Ng01-256F07
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B6Ng01-044A22
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B6Ng01-307I07
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B6Ng01-217O20
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B6Ng01-017J22
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B6Ng01-048K17
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B6Ng01-173B06
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B6Ng01-054K09
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B6Ng01-201F03
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B6Ng01-113I08
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B6Ng01-350E03
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B6Ng01-048H15
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B6Ng01-187C19
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B6Ng01-007H23
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B6Ng01-249K16
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B6Ng01-202L13
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B6Ng01-263B16
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B6Ng01-334A08
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doublet
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B6Ng01-160B02
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