Query= MSMg01no415_l21.b1 MSMg01no415_l21.b1 CHROMAT_FILE:
MSMg01no415_l21.b1 PHD_FILE: MSMg01no415_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:12 2005
(475 letters)
>mm_chr7_103984442_103985316
Length = 875
Score = 882 bits (456), Expect = 0.0
Identities = 470/475 (98%)
Strand = Plus / Plus
Query: 1 ctagggcgggtcttcttttggtttgtttcctattttgaggtccttaggaaatgtcatcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagggcgggtcttcttttggtttgtttcctattttgaggtccttaggaaatgtcatcta 260
Query: 61 ccaaattattctacttctgaaacatgtgaaaaccacccctctagatgattgctaattgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaattattctacttctgaaacatgtgaaaaccacccctctagatgattgctaattgcc 320
Query: 121 ctgtttatttgctcagtcctctattttgcccctgtgactaagtactcactaggcacggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtttatttgctcagtcctctattttgcccctgtgactaagtactcactaggcacggtc 380
Query: 181 caggctctgcactacagagaaagccttgccacgccctcacactgcctgatgtctgggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggctctgcactacagagaaagccttgccacgccctcacactgcctgatgtctgggtgg 440
Query: 241 agaggagagggagttgcagcttagcaggataccaaggccttggtgtgcggtttcgaggga 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggagagggaggtgcagcttagcaggataccaaggccttggtgtgcggtttcgaggga 500
Query: 301 gcgagatgagagttctgagcaggaacttcacagaagtcctctgaagtgggtgctgaagga 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gcgagatgagagttctgagcaggaacttcacagaagtcctctgaagtgggcgctgaagga 560
Query: 361 caagactgttggagtgtgtgtagagatgacattttaggtagatgggagaacattacacac 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 caagactgttggagtgtgtgtagagatgacattttaggcagatgggagaacattacacac 620
Query: 421 gcatgggcaccacacattctcctggaaaatgcangaaaaacgtatggtttgtggt 475
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 gcacgggcaccacacattctcctggaaaatgcaggaaaaacgtatggtttgtggt 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_l21.g1 MSMg01no415_l21.g1 CHROMAT_FILE:
MSMg01no415_l21.g1 PHD_FILE: MSMg01no415_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:12 2005
(425 letters)
>mm_chr7_104171546_104172372
Length = 827
Score = 772 bits (399), Expect = 0.0
Identities = 420/429 (97%), Gaps = 6/429 (1%)
Strand = Plus / Minus
Query: 1 tcagctcggaatgttggaccaaaggtaaatacttgggtaaaagctctgcaattcaagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcagctcggaatgttggaccaaaggtaaatacttgggtaaaagctctgcaattcaagatt 568
Query: 61 aagaacacaaaaatagaatacacatgattcattgtaagtatttaaaatacccttagctct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagaacacaaaaatagaatacacatgattcattgtaagtatttaaaatacccttagctcc 508
Query: 121 taagg-aaaaaaatgttttccatctaagctgaacccacaaacacacaca---cagtcatt 176
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 507 taaggaaaaaaaatgttttccatctaagctgaacccacaaacacacacattgc--tcatt 450
Query: 177 gctctatttctctaatggaggataataatagtttcattaaaaatgttacatttatagaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gctctatttctctaatggaggataataatagtttcattaaaaatgttacatttatagaaa 390
Query: 237 ccattttatcccataggaatctgcaactgctttataaaccctatggttttctaaatatag 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccattttatcccaaaggaatctgcaactgctttataaaccctatggttttctaaatatag 330
Query: 297 aaatataaccactcctgggtgcactctactgcagctgccttaaacagcaggcaactacat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaatataaccactcctgggtgcactctactgcagctgccttaaacagcaggcaactacat 270
Query: 357 ttcaaagcaatcaagaacaaagtaagggaaaaacagcacaacccaagaaacagaattaag 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 ttcaaagcaatcaagaacaaagtaagagaaaaacagcacaacccaagaaacagaattaag 210
Query: 417 aacaatgaa 425
|||||||||
Sbjct: 209 aacaatgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 827
Length adjustment: 9
Effective length of query: 416
Effective length of database: 818
Effective search space: 340288
Effective search space used: 340288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
