BAC Information

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BAC

Clone NameMSMg01-415P11
Chromosome7 (Build37)
Map Location 60,433,645 - 60,434,146
singlet/doubletsinglet
Overlap geneGm1865
Upstream geneEG620782, LOC100040692
Downstream geneLOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415P11.T7 (MSMg01no415_p11.b1)MSMg01-415P11.TJ (MSMg01no415_p11.g1)
ACCAG511897AG511898
length735729
length of high quality
(start - end)
559 (39 - 597)499 (69 - 567)
definitionCHROMAT_FILE: MSMg01no415_p11.b1 PHD_FILE: MSMg01no415_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:29 2005CHROMAT_FILE: MSMg01no415_p11.g1 PHD_FILE: MSMg01no415_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TGTTTACCTCTGTTCCCCATTTTTTAATAGGGTCATTTTGTTCTCTGGAA
TCTAACTTCTTGAGTTCTTTGTATATATTGAATATTAACCCACTATCCGA
TGTAGGATAAGTAAAAATTTTTGCCAATCTGTTAGTTGCTGTTTTTCCCA
TTTCATAAGCTTTTCAATTTCATGAGGTCCATTTGTCAATACTTTATCTT
AGAGCATAAGTCGTTAGTGTTCTCTTCAAGAACTCCCCCCCCCCAGGCCC
CGTGCCTATATGTTTGAGATTTTTCCCCAATTTTCTCTATTGGATTCAGT
GTATCTCATTTTATGTGGAGGTCCTTGATTCACTTGGACTTGAGCTTTAT
ACAAGGAGATAAATATGGTTCAATGTGCATTCTTCTACATGTTGACCACA
AGTTGAACCAGCACCATTTGTTGAAACTGCTGTCTTTTTTCCACTGGATG
ATTTTAGCTCCTTTGTCAAAGATCAAGTGGCCATAGGTATGTGGGTTCAT
TTCTGGTTCTTCTATCCTATTCTATTGATCTACCTGCCTGTCTCTGTACC
AATACCATGCAGTTTGTTTTGTTTCTGCCTCTTTTTTAATCCCTATTGAT
CCACCGNACCAGTTTGACTTTAAACGATGGCGATTCCCTCCTGAAGTTCC
CTTTATTTTGTTGACACAACTTTTCCCCCACCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATCAACATGGATTCATTTATACTTTAGTTTT
CTTTATTTAAATTAAAATATTAAGACTTATCTTCTCAATGTTAGTATTAT
GTAATCCAGAGACAGACACAAAGGCCACTTTGAAAGGTAACTCACTTCAA
AAATTAACACATGGTGAATGGATAGATCTAAAAGGAATTTTCAGTTTCCA
TTTTTGTAGTCATTACATTTTTGCTGGATGTCTATTTCTCAATGCTTATA
TAAAATTCATAGATGCATGCTTTGACATTTTTTGCAGGAATCTCTCTACC
AAACATTAGTGCAGTGAATAGCTAAAACGTCCCACATGAGATAAACTGAC
CAGGATCCTTTAGCATGCTAGAAAAGTACAAGTTGAGAGAATTTTCTCCT
GGTAGTATTAGAAAAATTTTATCTTTTATTCCATTATTTCATACATTACT
GTTTTTACTGTTTCTTGTGCCCTTTCAGGATGGACACATCTCAGACTCAC
CCATTTTATGTATCAGCTAAATGATTAATGGATATGTGCAAAAAAGACAT
TTTATTTAGAGGCAGAAGTAGATAAAACCATCCCAGGAAGCATAATAAGA
AAGTCATGCCTGCGGAAAACTTCATTTTGTGCTTAAGTCAGAGAAAATGT
TGCCCATAAAGTAAGAGGGTGGTCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_p11.g1 MSMg01no415_p11.g1 CHROMAT_FILE:
MSMg01no415_p11.g1 PHD_FILE: MSMg01no415_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:29 2005
         (499 letters)



>mm_chr7_60433385_60434283
          Length = 899

 Score =  793 bits (410), Expect = 0.0
 Identities = 479/506 (94%), Gaps = 13/506 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcaacatggattcatttatactttagttttctttatttaaattaaaatattaagactt-- 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 762 tcaacatggattcatttatactttagttttctttatttaaattaaaatattaagacttat 703

                                                                       
Query: 61  ---atcttctcaatgttagtattatgtaatccagagacagacacaaaggccactttgaaa 117
              |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 702 aaaatcttctcaatgttagtattatgtaatccagagacagacacaaaggtcactttgaaa 643

                                                                       
Query: 118 ggtaactcacttcaaaaattaacacatggtgaatggatagatctaaaaggaattttcagt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 642 ggtaactcacttcaaaaattaacacatggtgaatggatagatctaaaagaaattttcagt 583

                                                                       
Query: 178 ttccatttttgtagtcattacatttttgctggatgtctatttctcaatgcttatataaaa 237
           |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct: 582 ttccatttttgtagtcattagatttttgctgaatgtctatttctcaacgcttatataaaa 523

                                                                       
Query: 238 ttcatagatgcatgctttgacatttttt-gcaggaatctctctaccaaacattagtgcag 296
           ||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 522 ttcataggtgcatgctctgacatttttttgcaggaatctctctaccaaacaatagtgcag 463

                                                                       
Query: 297 tgaatagctaaaacgtcccacatgagataaactgaccaggatcctttagcatgctagaaa 356
           |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 462 tgaatagctaaaacttcccacgtgagataaactgaccaggatcctatagcatgctagaaa 403

                                                                       
Query: 357 agtacaagttgagagaattttctcctggtagtattag--aaaaattttatcttttattcc 414
           | | |||||||||||||||||||||||||||||||||  |||||||  ||||||||||||
Sbjct: 402 aattcaagttgagagaattttctcctggtagtattagtaaaaaatt--atcttttattcc 345

                                                                       
Query: 415 attatttcatacattactgtttttactgtttcttgtgccct-ttcaggatggacacatct 473
           |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 344 attatt-catacattactgtttttactgtttcctgtgccctgttcaggatggacacatct 286

                                     
Query: 474 cagactcacccattttatgtatcagc 499
           |||||||||| |||||||||||||||
Sbjct: 285 cagactcacc-attttatgtatcagc 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)