BAC Information

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BAC

Clone NameMSMg01-416D23
Chromosome7 (Build37)
Map Location 30,946,131 - 30,946,625
singlet/doubletsinglet
Overlap geneZfp146
Upstream geneSpred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382
Downstream geneEG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416D23.T7 (MSMg01no416_d23.b1)MSMg01-416D23.TJ (MSMg01no416_d23.g1)
ACCAG512111AG512112
length750766
length of high quality
(start - end)		499 (46 - 544)408 (76 - 483)
definitionCHROMAT_FILE: MSMg01no416_d23.b1 PHD_FILE: MSMg01no416_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:49 2005CHROMAT_FILE: MSMg01no416_d23.g1 PHD_FILE: MSMg01no416_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAATGAATGGAAAGACGTGTGTATGATACAGGCCTGCAATCAGC
GAATGCAGCGGCGGAAAAGCAGAGCAGTGCTGAACTGTGAACACAGTCAT
CTGCGGTCAAGAGTGGCAGGCAGGCAGGCCTGTTGTGACGGCTGTCAGTG
TGGATCTGCGGGTTGTCACTAGTCCAGGTACCGAGGACAGACGTTATAGA
GTGACACTGTCCATTTACCAGGACTTAGAACATGAAAACACTTGCTTCAG
CTGAACACCAAGACGACGTTTGGAGGTGAAACCTGCACACCACAAACTAT
AACCGATAGTAAAAGTCAGATATATGGGGGGTATTGAAAGCAGAAATAAA
GAAATGCTATACTTTATACAAGGTTGACTTTGGGAGTGGGAAAACATTCC
TTGTAATATTTGAAAATACTTAGAAATTCTCATGAGTATTTATGCTCAGG
AGGTGAGGCACTAGGAAATTGACCATGACTTAATTTAGACTAGCCAAATG
TTAGAACTGAACTGCCTGTTGGAAATGGAATGAGAAAATTTTTGGTGGAC
TGTTACGCAGACATCTGGCAGATGCAACAGACGAGGTGTGTGTGTACCTG
GAAGGACTCTGGAAGTGATGTGAGGGAAGCTCAATGTACAGGATGCTTAC
AGTACAGTGACTTTTCAGNTAAAATTTCCTCTGGAAACTCAATGTATTAT


NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTAAGGACG
AACTAGGACTGTTGGAACACTGGCGGACGGCTTTAGCTATGTCAGAATTC
AATCTTAAAAGGCACTTATGATAGGAAAATATTGAAAGAGAGCACGTGGA
TCCATACACTAGACTAACGCGGGAATGGAACACGGGAATGAAAAATTACT
GTATGGGTAGGGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCT
TTTGCCTCATGAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGACTCGA
CCAAAGAGCGTAGCAGACATAGATAAACATGGTTAACAGATTTTCACAAC
ACAAAGCCAATTAAGAGAAACTAAGGAAAGGTACATGTCTCCTAAAATTA
CTTGCATCTTANACAGAAAATAGGATCTGAGGTTATGTTCAGGGTTAGAA
TAATGGGGAAAATCAGAAGACGGCTTTCACTAATCAGAAAACACAAACCC
ATGGCAGAAGTGGAACCAGCAGATGTCANTTCCCGAAAGGGGAAACTTTA
AACTAATTTACAGGACGCTTACTGGCATAAAAAATGAATACCTTTAACTA
CCGCATAAAACTGAAAAAAAATAAGGGGTTCCCCCCTGGGGTCCTCTGGG
ACTGAGAAAGGACTGGCTTGGCCGGCTGTGAAAAAAGAAACCCCGGAAAA
GAAATTGGGAATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_d23.b1 MSMg01no416_d23.b1 CHROMAT_FILE:
MSMg01no416_d23.b1 PHD_FILE: MSMg01no416_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:49 2005
         (499 letters)



>mm_chr7_30945927_30946825
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/495 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaatgaatggaaagacgtgtgtatgatacaggcctgcaatcagcgaatgcagc 64
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattcacaatgaagggaaagacatgtgtatgatacaggcctgcaatcagcgaatgcagc 640

                                                                       
Query: 65  ggcggaaaagcagagcagtgctgaactgtgaacacagtcatctgcggtcaagagtggcag 124
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 639 ggtggaaaagcagagcagtgctgaactgtgaacacagtcgtctgcggtcaagagtggcag 580

                                                                       
Query: 125 gcaggcaggcctgttgtgacggctgtcagtgtggatctgcgggttgtcactagtccaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcaggcaggcctgttgtgacggctgtcagtgtggatctgcgggttgtcactagtccaggt 520

                                                                       
Query: 185 accgaggacagacgttatagagtgacactgtccatttaccaggacttagaacatgaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 accgaggacagacgttatagagtgacactgtccatttaccaggacttagaacatgaaaac 460

                                                                       
Query: 245 acttgcttcagctgaacaccaagacgacgtttggaggtgaaacctgcacaccacaaacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acttgcttcagctgaacaccaagacgacgtttggaggtgaaacctgcacaccacaaacta 400

                                                                       
Query: 305 taaccgatagtaaaagtcagatatatggggggtattgaaagcagaaataaagaaatgcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 taaccgatagtaaaagtcagatatatggggggtattgaaagcagaaataaagaaatgcta 340

                                                                       
Query: 365 tactttatacaaggttgactttgggagtgggaaaacattccttgtaatatttgaaaatac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tactttatacaaggttgactttgggagtgggaaaacattccttgtaatatttgaaaatac 280

                                                                       
Query: 425 ttagaaattctcatgagtatttatgctcaggaggtgaggcactaggaaattgaccatgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttagaaattctcatgagtatttatgctcaggaggtgaggcactaggaaattgaccatgac 220

                          
Query: 485 ttaatttagactagc 499
           |||||||||||||||
Sbjct: 219 ttaatttagactagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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