BAC Information

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BAC

Clone NameMSMg01-416M13
Chromosome7 (Build37)
Map Location 19,574,057 - 19,574,305
singlet/doubletsinglet
Overlap geneNanos2
Upstream geneCeacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2
Downstream geneP42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416M13.T7 (MSMg01no416_m13.b1)MSMg01-416M13.TJ (MSMg01no416_m13.g1)
ACCAG512518AG512519
length705715
length of high quality
(start - end)		249 (45 - 293)521 (55 - 575)
definitionCHROMAT_FILE: MSMg01no416_m13.b1 PHD_FILE: MSMg01no416_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:29 2005CHROMAT_FILE: MSMg01no416_m13.g1 PHD_FILE: MSMg01no416_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTACAGATGCGAGAGAGATCCGCGGAATTCAAAGACATTACACTAACAA
CGCTTTATTCAGCAGCAGACACCCCTCCTCCACCCTCATCCCATTTCCAA
GCCAACCTCCTAGATAGCATAAAACCCAACTGGCATTCTTCTCTGCCCCT
AAAATTAAAACCTACGCAGTCATCAGTCCCATGAGGTCTCAGACTCTTCT
CACCATGGGACACACACTGACGTAACACACTCAACTATATTGGATGGGTA
GAAGAGAGAGAATGTCTCTCACCCACCGGGAGTCAGGGATCCATCTTTTT
AGTGGGGCTGGGGGCAGGAATAGAGTGAACCATGGTTAGTGATGAAGTGA
AATCTGTGGGCTTCTGCTCACCCGAGGCAGTCTGAAGTTACAAAGGTCTG
GCAGCCTTCCCAGAGGGTCCCAACCCTCCTCTAGTTCCTGTAACCTTCCT
CTTATTCCTGATGGACATGGCCATGTTCAAGGAACTAAGGAGCTGAACGT
GAATGGTCCATGTAGAAGTTTGAGTCTGCAGATGCTGAAAAAAGGTGAAG
ATAGATGGATGGTCTCATAGTCAGTACCAACCTCCACTTCTTTGGCAGTG
ACAATCTGGATCATGCTCTGGTACTGGTCCCCAGTTTCTGAATATTGGCC
TGTCATAGCACACTGACTCTATTAGGCAGCAAATCCTAGGACCCCTCCTC
CCCAG

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGACTGGCATGTCTCCACACACTGAGCCATCTCTCTGGCATTCCCA
GGTTTAATTTCTACTTGGAGAGTCACCCTGTCATGGTTAGGAACATTGGC
CTTCAGACCATGGCAGCCAATGTGACTAACTTTGAACAGGGACAGCTGAG
GCTCTTCTTTCCCTCCTCAGCTCCTGTCTGCTCTGAGGGTCCTGCTGCTG
AGCCTCTGTCCCTCACTGCACCTTCTGCTCCATGACTACAAACAGATATC
TTTTTCTTCTCTAGACATCTCCTCTACAGAATACTTTGGACTTCTGAGTT
TCCCTTCCCACACACAATCAGATAGCTGGAACACTTACCTGTGAGCAGAA
CCCTTTGCCAGGGGGTACACCCATTGCTGAGAAGCTCAGAGGACACCTCC
ATATCTCTTCTCACTGTACTGGCCTTTCTCTGAGGAGACCTGCAAGGCAC
CTGGACTGTGCTGTCCTTCCTCCTTCTGAGCTGAGTTTTCTCTCAGGCAG
GAACACTTCACAGAATCCTATAGGCTGTGGGTGGTGGGGTCTGTGACCAC
AGCACTGCTCAGTCACTTCCACTCTCAGTGCTACCCTGTATCTCACATTT
TCTCTCTTTATGTTTCTTCTCCAACAAGACCTTGAGCAACAAGGGTGATA
AGCTTCCACACTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_m13.b1 MSMg01no416_m13.b1 CHROMAT_FILE:
MSMg01no416_m13.b1 PHD_FILE: MSMg01no416_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:29 2005
         (249 letters)



>mm_chr7_19573857_19574505
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacaacgctttattcagcagcagacacccctcctccaccctcatcccatttccaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taacaacgctttattcagcagcagacacccctcctccaccctcatcccatttccaagcca 390

                                                                       
Query: 61  acctcctagatagcataaaacccaactggcattcttctctgcccctaaaattaaaaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acctcctagatagcataaaacccaactggcattcttctctgcccctaaaattaaaaccta 330

                                                                       
Query: 121 cgcagtcatcagtcccatgaggtctcagactcttctcaccatgggacacacactgacgta 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcagtcatcagtcccatgaggtctcagactcttctcaccatgggacacacactgacgta 270

                                                                       
Query: 181 acacactcaactatattggatgggtagaagagagagaatgtctctcacccaccgggagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acacactcaactatattggatgggtagaagagagagaatgtctctcacccaccgggagtc 210

                    
Query: 241 agggatcca 249
           |||||||||
Sbjct: 209 agggatcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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