Query= MSMg01no416_p23.b1 MSMg01no416_p23.b1 CHROMAT_FILE:
MSMg01no416_p23.b1 PHD_FILE: MSMg01no416_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:44 2005
(519 letters)
>mm_chr7_19792454_19793372
Length = 919
Score = 636 bits (329), Expect = 0.0
Identities = 458/559 (81%), Gaps = 92/559 (16%)
Strand = Plus / Minus
Query: 39 ctcagctattcaaacacactctaattgccactcaataaaccgtgcccaagttcctgcctc 98
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 919 ctcagctattcaaacacactctaattgccactcaataaacagtgcccaagttcctgcctc 860
Query: 99 tgactgaactgggctaggagacagctaggagacagcatggaagtgaccaagaatcctggc 158
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tgactgaactgggcaaggagacagctaggagacagcatggaagtgaccaagaatcctggc 800
Query: 159 ccttcctacccatggtccagagaaagtgagagacacagatctgtccccaacaggcaacac 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tcttcctacccatggtccagagaaagtgagagacacagatctgtccccaacaggcaacac 740
Query: 219 ccagagttgtccaggcctgtgacaggggccaggagatagctggagccacaagaggcttta 278
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccagagttgtcgaggcctgtgacaggggccaggagatagctggagccacaagaggcttta 680
Query: 279 tt---ttttat------------------------------------------------- 286
|| ||||||
Sbjct: 679 tttgattttattggaaggagataacacgcatcagaacttccacctggaatggctccttca 620
Query: 287 ------------------------ttgccccttccatgataccactttggtctcagcatc 322
||||||||||||||||||||||||||||||||||||
Sbjct: 619 cccttctgtgttaaggtctttctgttgccccttccatgataccactttggtctcagcatc 560
Query: 323 ttctgaggcaggtatgccctttccatgaggtagtgttgaggttgtcttggttttcactgt 382
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctgaggcaggtctgccctttccatgaggtagtgttgaggttgtcttggttttcactgt 500
Query: 383 acccaaaaccatgcacacacattcacacacacac--aaacacacatgtatacccacacat 440
||||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 499 acccacaaccatgcacacacattcacacacacacttacacacacatgtatactcacacat 440
Query: 441 attcatgcacacatacaaacacacatacacacttgtgcacacacacatacccacgtgcac 500
||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct: 439 attcatg------------cacacatacacacttgtgcacacacac--acacacgtgcac 394
Query: 501 aggcatacacatatacaca 519
|||||||||||||||||||
Sbjct: 393 aggcatacacatatacaca 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_p23.g1 MSMg01no416_p23.g1 CHROMAT_FILE:
MSMg01no416_p23.g1 PHD_FILE: MSMg01no416_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:44 2005
(465 letters)
>mm_chr7_19586781_19587647
Length = 867
Score = 783 bits (405), Expect = 0.0
Identities = 447/469 (95%), Gaps = 17/469 (3%)
Strand = Plus / Plus
Query: 1 tgactgggggaggtataggttgggtcctttgcctctcattgctgcgaggtgtgtctgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactgggggaggtataggttgggtcctttgcctctcattgctgcgaggtgtgtctgacc 260
Query: 61 tccggagctcagcccctcccttcctttctcctcagtgctgacaagatgtcaataaactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccggagctcagcccctcccttcctttctcctcagtgctgacaagatgtcaataaactta 320
Query: 121 ttttcatacaattaacttgaggctctgagacaggccttgggagtccagcacttagggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcatacaattaacttgaggctctgagacaggccttgggagtccagcacttagggact 380
Query: 181 gctccaccccgccccagaggacatgcctcctgaacttgaggcaggtgattgcccctctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccaccccgccccagaggacatgcctcctgaacttgaggcaggtgattgcccctctaa 440
Query: 241 aagccttaactaaccctggtgcagaagcacacacttgaaggttgcaacaaacag--ttta 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 aagccttaactaaccctggtgcagaagcacacacttgaaggttgcaacaaacagagttta 500
Query: 299 tctaggtctgttaagagcagttcaataaagtaattgggtagttaactcaggcaaggacag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaggtctgttaagagcagttcaataaagtaattgggtagttaactcaggcaaggacag 560
Query: 359 agacgctgcctgagccttttac--agccttaaagagccttttacagccttaaagagccta 416
||||| || || || | ||| || |||||||||||||||||||||||
Sbjct: 561 agacggggca-ga-------acgaa-----aaataggcttttacagccttaaagagccta 607
Query: 417 tcaagggatcatggctcatacttgccattcctgtactagggaggcttgc 465
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcaagggatcatggctcatacttgccattcctgtactagggaggcttgc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 867
Length adjustment: 10
Effective length of query: 455
Effective length of database: 857
Effective search space: 389935
Effective search space used: 389935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
