BAC Information

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BAC

Clone NameMSMg01-417A17
Chromosome7 (Build37)
Map Location 95,246,097 - 95,246,645
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneLOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417A17.T7 (MSMg01no417_a17.b1)MSMg01-417A17.TJ (MSMg01no417_a17.g1)
ACCAG512718AG512719
length747764
length of high quality
(start - end)
408 (66 - 473)549 (76 - 624)
definitionCHROMAT_FILE: MSMg01no417_a17.b1 PHD_FILE: MSMg01no417_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005CHROMAT_FILE: MSMg01no417_a17.g1 PHD_FILE: MSMg01no417_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCACTTACCCAGGGTTGCTGTTGTTGTTTGGGGGGAAGTTGGGA
GACTTTTAATGACTGCTTCTGTTTCTTTATGAGTTATAAGACTATTCCAG
TAGTTTACCTGCTCTTGAGTTGGTATCTTTCCAGAAAATCTTTCCTTTCA
TTTAGATTTTCCAATTTTGTGTACTACAAGCTTTTGAAGTAAGACCCAAC
TATTCTTTGACTTTCCTCATTGTCAATTTTTATGTCTCCCTTTTCATTTC
TAATTTTGTTCATTTGGATACTGTCTCTCTGCTTTTTTAGGTAGTTTTGC
TAAGGGTTTGTCTATCTTGTTGATTTTTCTCAAAGAACCAGCTCTTGGTT
TTGGTGATTCTTTGTACTGGTCTCTTTTTTTCTAATTGATTGATTTTAGC
CTTGAGTTTGATTATTTCCTGCTGTCTACTGTGGCTATATGTATATTCTT
TTTTTTCTTGAGCCTTCAGATGTACTTTTAATCCATTAATATGAGAACTC
TCCAATTCCTTTATGAAGGTACTTAGAGCTGTGAATTGTTTCTTAACACT
GCTTTCATTGTGTCCCATGTGTTTGGGGATGTTTTGCCTTCATTTTCATT
AAGGTCTAGAAAGACTTTAATTTCTTTCCTTATTTCTTCCCCCACCCAGT
GATCATTGAGTAGAGAGATGTTCAGTTTCCATGAATATGGAGGCTTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAACATAAACTTTAATAGAATCT
TCAAATCACTTTTATGCTGATGAGATTCTCATAACCAAAGACTACGCTGG
CATCAACTACCCTGTGAACATGAGTCTGGGTTTTGTAAACACACTTACTT
GCTTGTTTATGCAGGTCTCATGTTCCTACACACATTTCATTACACAGCCA
CTGTAGATTTCTAAACTGGTGAGTATAGAAATAGGCAAAAGATCTTAGAG
CTTGGCAGCCTTCTTATGGACATGACACACCTACACCAAGAGACACCACC
AACTGTGCATAGACTATTGCTGACAGGTATGTGATGAACAGGCCCCCTAG
AGGGCAGCAGAGCCTCGTGGAATTAGAGATGTGCAAAGTAGGTGGAAGAG
GGTTTATGGGGCTTTGGAGACATGTGAGAGCAATACACACATTTATGGGG
AAGAAACCAAGGAAAGCCCAGGGAATTTTAAAAGTTCAGTAATCTAAGGG
GGAAGAAATTTTAAGTTAGTGAAAAGACATCAAAAATACCTAGGCTTGCA
GAGGAAATGACTAGATGCTTGTCAGAGCAAAGCAAGGTCTTTTCTTTTGG
CGATCCTACTACTCAGGCCATAATAAGTAAATAACATTAGCTGGAGAATG
TTATTCACCATATTGCCTGNTAAAGGTAGAAGTTATATTTTTTTTATGTC
CGACTTCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_a17.g1 MSMg01no417_a17.g1 CHROMAT_FILE:
MSMg01no417_a17.g1 PHD_FILE: MSMg01no417_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:48 2005
         (549 letters)



>mm_chr7_95245897_95246845
          Length = 949

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataacataaactttaatagaatcttcaaatcacttttatgctgatgagattctcataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataacataaactttaatagaatcttcaaatcacttttatgctgatgagattctcataac 260

                                                                       
Query: 61  caaagactacgctggcatcaactaccctgtgaacatgagtctgggttttgtaaacacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagactacgctggcatcaactaccctgtgaacatgagtctgggttttgtaaacacact 320

                                                                       
Query: 121 tacttgcttgtttatgcaggtctcatgttcctacacacatttcattacacagccactgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttgcttgtttatgcaggtctcatgttcctacacacatttcattacacagccactgta 380

                                                                       
Query: 181 gatttctaaactggtgagtatagaaataggcaaaagatcttagagcttggcagccttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttctaaactggtgagtatagaaataggcaaaagatcttagagcttggcagccttctt 440

                                                                       
Query: 241 atggacatgacacacctacaccaagagacaccaccaactgtgcatagactattgctgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggacatgacacacctacaccaagagacaccaccaactgtgcatagactattgctgaca 500

                                                                       
Query: 301 ggtatgtgatgaacaggccccctagagggcagcagagcctcgtggaattagagatgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtatgtgatgaacaggccccctagagggcagcagagcctcgtggaattagagatgtgca 560

                                                                       
Query: 361 aagtaggtggaagagggtttatggggctttggagacatgtgagagcaatacacacattta 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 aagtaggtggaagagggtttatggggctttggagacatgtgagaacaatacacacattta 620

                                                                       
Query: 421 tggggaagaaaccaaggaaagcccagggaattttaaaagttcagtaatctaagggggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggggaagaaaccaaggaaagcccagggaattttaaaagttcagtaatctaagggggaag 680

                                                                       
Query: 481 aaattttaagttagtgaaaagacatcaaaaatacctaggcttgcagaggaaatgactaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 aaattttaagttagtgaaaagacatcaaaaatacctaggcttgcagaggaaatgactagg 740

                    
Query: 541 tgcttgtca 549
           |||||||||
Sbjct: 741 tgcttgtca 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)